Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LPS07_RS01655 Genome accession   NZ_CP087716
Coordinates   351462..352271 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain AP2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346462..357271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS01620 (LPS07_01620) - 347020..347175 (-) 156 Protein_309 hypothetical protein -
  LPS07_RS01625 (LPS07_01625) rpoZ 347214..347492 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  LPS07_RS01630 (LPS07_01630) gmk 347565..348194 (-) 630 WP_002116973.1 guanylate kinase -
  LPS07_RS01635 (LPS07_01635) ispH 348317..349267 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LPS07_RS01640 (LPS07_01640) fimU 349437..349910 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  LPS07_RS01645 (LPS07_01645) pilV 349904..350464 (+) 561 WP_230445122.1 type IV pilus modification protein PilV Machinery gene
  LPS07_RS01650 (LPS07_01650) pilW 350464..351465 (+) 1002 WP_057061737.1 PilW family protein Machinery gene
  LPS07_RS01655 (LPS07_01655) pilX 351462..352271 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LPS07_RS01660 (LPS07_01660) pilY1 352283..356137 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene
  LPS07_RS01665 (LPS07_01665) pilY2 356148..356630 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  LPS07_RS01670 (LPS07_01670) pilE 356627..357052 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=631197 LPS07_RS01655 WP_017481716.1 351462..352271(+) (pilX) [Acinetobacter pittii strain AP2044]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=631197 LPS07_RS01655 WP_017481716.1 351462..352271(+) (pilX) [Acinetobacter pittii strain AP2044]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907