Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   LPS07_RS01650 Genome accession   NZ_CP087716
Coordinates   350464..351465 (+) Length   333 a.a.
NCBI ID   WP_057061737.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345464..356465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS01620 (LPS07_01620) - 347020..347175 (-) 156 Protein_309 hypothetical protein -
  LPS07_RS01625 (LPS07_01625) rpoZ 347214..347492 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  LPS07_RS01630 (LPS07_01630) gmk 347565..348194 (-) 630 WP_002116973.1 guanylate kinase -
  LPS07_RS01635 (LPS07_01635) ispH 348317..349267 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LPS07_RS01640 (LPS07_01640) fimU 349437..349910 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  LPS07_RS01645 (LPS07_01645) pilV 349904..350464 (+) 561 WP_230445122.1 type IV pilus modification protein PilV Machinery gene
  LPS07_RS01650 (LPS07_01650) pilW 350464..351465 (+) 1002 WP_057061737.1 PilW family protein Machinery gene
  LPS07_RS01655 (LPS07_01655) pilX 351462..352271 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LPS07_RS01660 (LPS07_01660) pilY1 352283..356137 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35816.47 Da        Isoelectric Point: 6.6395

>NTDB_id=631196 LPS07_RS01650 WP_057061737.1 350464..351465(+) (pilW) [Acinetobacter pittii strain AP2044]
MAHSFVSWKQRGFTLIELMVALALGLILVAVATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNTAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=631196 LPS07_RS01650 WP_057061737.1 350464..351465(+) (pilW) [Acinetobacter pittii strain AP2044]
ATGGCTCACTCATTTGTATCATGGAAGCAGCGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGTGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGGGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATACTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)

Type IV Pilus-assembly protein W (PilW)

(181-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85