Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   N5875_RS26430 Genome accession   NZ_CP104578
Coordinates   5897425..5898504 (+) Length   359 a.a.
NCBI ID   WP_338496546.1    Uniprot ID   -
Organism   Streptomyces sp. SJL17-4     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5892425..5903504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5875_RS26415 - 5892643..5893989 (+) 1347 WP_338496543.1 deoxyguanosinetriphosphate triphosphohydrolase -
  N5875_RS26420 - 5894107..5895366 (+) 1260 WP_318211076.1 FAD-dependent oxidoreductase -
  N5875_RS26425 dnaG 5895433..5897340 (+) 1908 WP_338496544.1 DNA primase -
  N5875_RS26430 rpoS 5897425..5898504 (+) 1080 WP_338496546.1 sigma-70 family RNA polymerase sigma factor Regulator
  N5875_RS26435 - 5898512..5899699 (-) 1188 WP_338496548.1 TerD family protein -
  N5875_RS26440 rcrQ 5899767..5901692 (-) 1926 WP_338496551.1 ABC transporter ATP-binding protein Regulator
  N5875_RS26445 rcrP 5901692..5903425 (-) 1734 WP_338496553.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 40584.14 Da        Isoelectric Point: 6.5300

>NTDB_id=631001 N5875_RS26430 WP_338496546.1 5897425..5898504(+) (rpoS) [Streptomyces sp. SJL17-4]
MSSRCPTPPDRQRSPPWRSPAVQTETRTVSQEPSPTAPDEPPEIPPQRRRADPGGNGPSSDLFRQYLREIGRIPLLTAEE
EVDLARRVEAGLFAEEKLANTPDLDSRLANDLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLI
RAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVIRVQRRMLQERGYEPTAEEVAAQLDVAPER
VGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRRHLEDVLSTLGERERKVVQLRYGLDDGRPRTL
EEIGRIFGVTRERIRQIESKTLTRLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=631001 N5875_RS26430 WP_338496546.1 5897425..5898504(+) (rpoS) [Streptomyces sp. SJL17-4]
GTGTCGTCCCGCTGCCCTACGCCCCCGGACCGGCAGCGATCACCCCCCTGGAGGTCGCCCGCCGTGCAGACCGAGACCCG
GACCGTGTCGCAGGAGCCGTCCCCCACCGCTCCGGACGAGCCGCCGGAGATACCCCCCCAACGCCGCCGCGCCGACCCCG
GCGGCAACGGGCCCTCCTCCGACCTCTTCCGCCAGTACCTCCGCGAGATCGGCCGCATCCCGCTGCTCACCGCCGAGGAG
GAGGTCGACCTCGCACGCCGCGTCGAGGCGGGTCTGTTCGCGGAGGAGAAACTCGCCAACACCCCCGACCTGGACTCCCG
GTTGGCGAACGACCTGGACCGGCTCGTCGTCCTCGGCAGGATCGCCAAACGCAAGCTCATCGAGGCCAACCTCCGCCTCG
TCGTCTCCGTCGCCAAACGGTACGTGGGCCGCGGCCTGACCATGCTGGACCTCGTCCAGGAGGGCAACCTCGGCCTCATC
AGGGCCGTCGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCGATGTC
CCGGGCCCTCGCCGACCAGGCCCGGACCATCCGCGTCCCCGTGCACGTCGTCGAACTCATCAACCGCGTCATCCGCGTCC
AGCGCCGCATGCTCCAGGAACGCGGCTACGAACCCACCGCCGAGGAGGTCGCCGCCCAACTGGACGTGGCCCCCGAGCGG
GTCGGCGAGGTGCTCCGCCTCGCCCAGGAACCCGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGACGTCGCCCTCGG
CGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCGGCCTTCCTCCTCCTCCGCCGCCACCTGGAGGACG
TCCTGTCCACCCTCGGCGAGCGCGAACGCAAGGTCGTCCAGCTCCGCTACGGCCTCGACGACGGCAGGCCCCGCACCCTG
GAGGAGATCGGCCGCATATTCGGCGTGACGCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCACCAGACTGCGGGA
CCACGCGTATGCGGACCAGCTGCGGGGCTACCTGGACTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(205-281)

Sigma-70 region 2 (Sigma70_r2)

(126-195)

Sigma-70, region 4 (Sigma70_r4)

(294-346)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.624

83.008

0.362