Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   N5875_RS26445 Genome accession   NZ_CP104578
Coordinates   5901692..5903425 (-) Length   577 a.a.
NCBI ID   WP_338496553.1    Uniprot ID   -
Organism   Streptomyces sp. SJL17-4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5896692..5908425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5875_RS26430 rpoS 5897425..5898504 (+) 1080 WP_338496546.1 sigma-70 family RNA polymerase sigma factor Regulator
  N5875_RS26435 - 5898512..5899699 (-) 1188 WP_338496548.1 TerD family protein -
  N5875_RS26440 rcrQ 5899767..5901692 (-) 1926 WP_338496551.1 ABC transporter ATP-binding protein Regulator
  N5875_RS26445 rcrP 5901692..5903425 (-) 1734 WP_338496553.1 ABC transporter ATP-binding protein Regulator
  N5875_RS26450 - 5903540..5904979 (-) 1440 WP_318211070.1 FGGY family carbohydrate kinase -
  N5875_RS26455 - 5905010..5905318 (-) 309 WP_338496556.1 YtxH domain-containing protein -
  N5875_RS26475 - 5906806..5906937 (+) 132 Protein_5218 VapC toxin family PIN domain ribonuclease -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62514.53 Da        Isoelectric Point: 5.1520

>NTDB_id=631003 N5875_RS26445 WP_338496553.1 5901692..5903425(-) (rcrP) [Streptomyces sp. SJL17-4]
MLIRLLRTHLGPYRKAIALLVLLQFLQTSASLYLPTLNADIIDNGVVAGDTGYILRFGALMVGVSVVQAVCNIGAVFYGA
RTASALGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMAFTLMVSAPIMCVGGIVMALGQDVALSGV
LLAVVPVLAISVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDDYEEERFRGANAELTDVSMATGRLMAL
MFPVVMTVVNISSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PVKPVTALDRRGYLEVRSADFRYPGAEESVLKDVGLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
ELDPALMARTVGLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEVAQAADFVRNLDAGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYETDALLRAALARETADSTVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHQELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=631003 N5875_RS26445 WP_338496553.1 5901692..5903425(-) (rcrP) [Streptomyces sp. SJL17-4]
GTGCTCATAAGACTTCTCCGAACCCACCTCGGGCCCTATCGAAAAGCAATCGCACTGCTCGTGCTGCTGCAGTTCCTGCA
GACCAGCGCGAGCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTCGCCGGGGACACCGGATACA
TCCTGCGCTTCGGCGCCCTGATGGTCGGCGTCTCCGTCGTCCAGGCCGTCTGCAACATCGGGGCCGTGTTCTACGGCGCC
CGCACCGCCTCGGCCCTGGGCCGGGACGTGCGTGCCGCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGGGAGCTGGG
GCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGATCCAGATGCTGGTCCTGATGGCCTTCA
CCCTGATGGTCTCCGCGCCCATCATGTGTGTCGGCGGCATCGTGATGGCCCTCGGCCAGGACGTGGCGCTCTCGGGTGTG
CTGCTCGCCGTGGTGCCGGTCCTCGCGATCTCGGTCTCCCTGATCGTCCGGAGGATGCGGCCGCTCTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTGAAGGACG
ACTACGAGGAGGAGAGGTTCCGCGGCGCCAACGCGGAGCTGACCGATGTGTCGATGGCGACCGGCCGACTGATGGCGCTG
ATGTTCCCGGTGGTCATGACCGTCGTGAACATCTCCAGCGTGGCGGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCGGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGGGCCGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGCGACCGAGTCCAGCGTGGTGCCG
CCGGTGAAGCCGGTCACCGCGCTCGACCGGCGGGGGTATCTGGAGGTCAGGAGCGCGGACTTCCGGTATCCGGGTGCGGA
GGAGTCCGTCCTCAAGGACGTCGGTCTGGTGGCCCGGCCCGGTGAGACGACCGCGGTCATCGGCTCCACGGGAAGCGGCA
AGTCGACCCTGCTCGGGCTCGTGCCCCGGCTCTTCGACGCCACCGGCGGCGAGGTCCTCGTCGACGGCGTCGACGTCCGC
GAGCTCGACCCCGCGCTGATGGCGAGGACGGTGGGACTCGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCGAC
CAACCTCCGGTACGGGAAGCCCGACGCGACCGACGAAGAGCTCTGGCACGCCCTGGAGGTCGCCCAGGCCGCCGACTTCG
TACGGAACCTCGATGCCGGCCTGGACGCGCCCATCGCGCAGGGCGGCACCAACGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTACCTGTTCGACGACTCGTTCTCCGCGCTCGACTACGAGACGGA
CGCCCTGCTGCGGGCCGCGCTCGCGCGGGAGACGGCCGACTCGACCGTCGTGATCGTCGCCCAGCGGGTCTCCACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTGGGCACCGGACGGCACCAGGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.057

100

0.402