Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   N5875_RS26440 Genome accession   NZ_CP104578
Coordinates   5899767..5901692 (-) Length   641 a.a.
NCBI ID   WP_338496551.1    Uniprot ID   -
Organism   Streptomyces sp. SJL17-4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5894767..5906692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5875_RS26425 dnaG 5895433..5897340 (+) 1908 WP_338496544.1 DNA primase -
  N5875_RS26430 rpoS 5897425..5898504 (+) 1080 WP_338496546.1 sigma-70 family RNA polymerase sigma factor Regulator
  N5875_RS26435 - 5898512..5899699 (-) 1188 WP_338496548.1 TerD family protein -
  N5875_RS26440 rcrQ 5899767..5901692 (-) 1926 WP_338496551.1 ABC transporter ATP-binding protein Regulator
  N5875_RS26445 rcrP 5901692..5903425 (-) 1734 WP_338496553.1 ABC transporter ATP-binding protein Regulator
  N5875_RS26450 - 5903540..5904979 (-) 1440 WP_318211070.1 FGGY family carbohydrate kinase -
  N5875_RS26455 - 5905010..5905318 (-) 309 WP_338496556.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68900.20 Da        Isoelectric Point: 5.0505

>NTDB_id=631002 N5875_RS26440 WP_338496551.1 5899767..5901692(-) (rcrQ) [Streptomyces sp. SJL17-4]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLKQLAPERGALWVMLIAGVLSVAASVVGPKILGKATDLVFAGVIGRQIEGGT
KAEAIERLRASGDSGMADMLTGVDFTPGQGIDFSAVGEVLLVVLGIYVAAGLLMLVSTRMSIKVINRTVYRMREDVQTKL
ARLPLSYFDKAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAARIGKR
SQPHFVQQWKSTGALNAHVEEMYSGHTLVKVFGRQEESARDFREQNEALYEAGFKAQFNSGVMQPVMFFISNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAPTSEELTDRVGRVSLEG
VSFRYEADKPLIEDLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSREELRAGIGMVLQDTW
LFGGTIADNIAYGATRAVTRAEIEEAARAAHADRFVRTLPEGYDTVIDDDGAGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLSCGGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=631002 N5875_RS26440 WP_338496551.1 5899767..5901692(-) (rcrQ) [Streptomyces sp. SJL17-4]
ATGGCCGGTCCTGGCGGACGCATGATGGCCGGTGGTGGCCCCGACCAGCGGTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTGCTCAAGCAGCTGGCGCCGGAGCGCGGCGCGCTCTGGGTGATGCTGATCGCCGGTGTGCTGTCGGTGGCGGCCTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCGACCGACCTCGTCTTCGCGGGTGTCATCGGGCGGCAGATCGAGGGCGGCACG
AAGGCGGAGGCCATCGAGAGGCTGCGCGCCTCGGGCGACTCCGGCATGGCGGACATGCTGACCGGGGTCGACTTCACGCC
GGGGCAGGGGATCGACTTCTCCGCCGTCGGCGAGGTGCTCCTCGTGGTCCTCGGCATCTACGTGGCGGCGGGCCTGCTGA
TGCTGGTCTCCACCCGGATGTCGATCAAGGTGATCAACCGGACGGTCTACCGGATGCGGGAGGACGTCCAGACGAAGCTG
GCGCGGCTTCCGCTGTCGTACTTCGACAAGGCCAAGCGCGGCGAGGTGCTGTCGCGGGCGACCAACGACATCGACAACAT
CTCGCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCGCCGCTGCTCGCGCTCGTGGCGCTGGTGACGGTGCCGGTCTCGGTCTTCGTCGCGGCGAGGATCGGCAAGCGC
TCGCAGCCGCACTTCGTGCAGCAGTGGAAGTCCACGGGCGCGCTCAACGCGCACGTGGAGGAGATGTACAGCGGGCACAC
GCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAGGGACTTCCGCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTCGTGGCCGTG
GTCGGCGGTCTGCGGGTGGCGAGCGGCACGCTCTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCGGCCGAGCGGATCTTCGAGCTGC
TCGACGCGGAGGAGCAGGAGCCGGACGCGCCGACGAGCGAGGAGTTGACCGACCGCGTGGGCCGGGTCTCCCTGGAGGGC
GTCTCCTTCCGTTACGAGGCCGACAAGCCGCTCATCGAGGACCTGTCGCTCACGGTCGAGCCGGGCCAGACGGTCGCGAT
CGTCGGCCCGACGGGCGCGGGCAAGACGACGCTGGTGAACCTGCTCATGCGGTTCTACGAGGTCACGGGCGGCCGGATCG
CCCTCGACGGGGTGGACATCGCGAAGATGTCCCGGGAGGAGCTGCGGGCCGGGATCGGCATGGTCCTCCAGGACACCTGG
CTGTTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCCACGCGCGCGGTGACGCGGGCGGAGATCGAGGAGGCGGC
GCGGGCCGCGCACGCCGACCGCTTCGTCCGCACCCTGCCCGAGGGGTACGACACGGTCATCGACGACGACGGGGCGGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTCCTCGACGAGGCC
ACCAGCTCGGTCGACACCCGGACCGAGGTCCTGATCCAGAAGGCGATGGCCCGACTGGCCCACGGGCGGACGTCGTTCGT
GATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGGGCA
CGCACGAGGAGCTGTTGTCGTGCGGCGGGGCGTACGCCCGGTTGTACGCAGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

96.256

0.385