Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPH40_RS02170 Genome accession   NZ_CP087685
Coordinates   520332..520814 (-) Length   160 a.a.
NCBI ID   WP_038271482.1    Uniprot ID   -
Organism   Xylella taiwanensis strain PLS4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 515332..525814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH40_RS02150 (LPH40_02150) - 516330..516995 (+) 666 WP_051482337.1 hypothetical protein -
  LPH40_RS02155 (LPH40_02155) - 517062..517643 (+) 582 WP_038271473.1 sigma-70 family RNA polymerase sigma factor -
  LPH40_RS02160 (LPH40_02160) - 517640..518293 (+) 654 WP_038271474.1 hypothetical protein -
  LPH40_RS02165 (LPH40_02165) - 518353..519633 (+) 1281 WP_230428293.1 S8 family serine peptidase -
  LPH40_RS02170 (LPH40_02170) ssb 520332..520814 (-) 483 WP_038271482.1 single-stranded DNA-binding protein Machinery gene
  LPH40_RS02175 (LPH40_02175) - 521061..522059 (+) 999 WP_038271484.1 polyprenyl synthetase family protein -
  LPH40_RS02180 (LPH40_02180) cyoA 522953..523897 (+) 945 WP_038271486.1 ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17684.64 Da        Isoelectric Point: 5.3093

>NTDB_id=630868 LPH40_RS02170 WP_038271482.1 520332..520814(-) (ssb) [Xylella taiwanensis strain PLS4A]
MARGINKVILVGNLGNDPDTKYTQGGMTVTTISLATTSVRKDRDGNTQERTEWHRVKFFGKLGDIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYITEIVADEMQMLGGRGDGGGGMGSERPPRQASQRQEYAPRRQPPPSPQSAPPPIDDFADDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=630868 LPH40_RS02170 WP_038271482.1 520332..520814(-) (ssb) [Xylella taiwanensis strain PLS4A]
ATGGCCCGTGGCATCAACAAAGTGATCCTCGTCGGTAACCTCGGTAATGATCCGGATACCAAATACACCCAAGGTGGTAT
GACGGTCACCACCATCAGCTTGGCGACAACCAGTGTGCGCAAGGATAGGGATGGCAATACCCAGGAACGGACCGAGTGGC
ACCGGGTCAAGTTTTTCGGAAAACTTGGCGACATTGCCGGGGAATATCTGCGTAAGGGGTCGCAGTGCTATATCGAGGGT
AGCATTCGGTACGACAAGTTCACTGGCCAGGACGGCCAGGAGCGCTACATCACCGAGATCGTTGCTGACGAGATGCAAAT
GCTGGGTGGCCGTGGTGATGGTGGTGGGGGCATGGGCAGTGAGCGCCCGCCGCGCCAAGCATCCCAGCGTCAGGAGTACG
CCCCACGTCGTCAGCCACCGCCGTCGCCGCAATCTGCGCCACCGCCGATAGACGATTTCGCTGACGACGATATTCCTTTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.458

100

0.525
  ssb Glaesserella parasuis strain SC1401

45.251

100

0.506
  ssb Neisseria meningitidis MC58

44.633

100

0.494
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.488