Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q783_RS00045 Genome accession   NC_022606
Coordinates   9500..10015 (+) Length   171 a.a.
NCBI ID   WP_023176497.1    Uniprot ID   -
Organism   Carnobacterium inhibens subsp. gilichinskyi     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4500..15015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q783_RS00030 (Q783_00030) gyrA 6378..8936 (+) 2559 WP_023176494.1 DNA gyrase subunit A -
  Q783_RS00040 (Q783_00040) rpsF 9153..9452 (+) 300 WP_023176496.1 30S ribosomal protein S6 -
  Q783_RS00045 (Q783_00045) ssb 9500..10015 (+) 516 WP_023176497.1 single-stranded DNA-binding protein Machinery gene
  Q783_RS00050 (Q783_00050) rpsR 10045..10284 (+) 240 WP_007724031.1 30S ribosomal protein S18 -
  Q783_RS00055 (Q783_00055) - 10576..12576 (+) 2001 WP_023176498.1 DHH family phosphoesterase -
  Q783_RS00060 (Q783_00060) rplI 12581..13036 (+) 456 WP_023176499.1 50S ribosomal protein L9 -
  Q783_RS00065 (Q783_00065) dnaB 13228..14613 (+) 1386 WP_023176500.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19128.78 Da        Isoelectric Point: 4.9815

>NTDB_id=63073 Q783_RS00045 WP_023176497.1 9500..10015(+) (ssb) [Carnobacterium inhibens subsp. gilichinskyi]
MINNVVLVGRLTKDADLRYTSNGTAVATFSLAVNRQFTNQKGERDADFINCVIWRKSAESFANFTRKGALVGVEGRIQTR
SYDNQQGQRVYVTEVVVETFSLLESKSKSEQRKDQSDSNSGSYGSQQSSYNNTQGNSQEAPRNQQYQNFGNSDPFEKSGQ
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=63073 Q783_RS00045 WP_023176497.1 9500..10015(+) (ssb) [Carnobacterium inhibens subsp. gilichinskyi]
GTGATTAACAATGTTGTTTTAGTTGGAAGATTAACAAAAGATGCTGATTTAAGATACACTTCAAATGGCACAGCGGTAGC
AACTTTTTCATTGGCTGTAAACAGACAGTTTACAAACCAAAAAGGTGAACGAGATGCAGATTTTATTAACTGTGTAATTT
GGAGGAAAAGTGCTGAATCATTTGCAAATTTCACTAGAAAAGGTGCATTAGTAGGTGTAGAAGGCCGTATTCAAACTCGT
TCTTATGATAATCAACAAGGGCAACGTGTGTATGTTACAGAAGTAGTTGTTGAAACGTTCTCATTATTAGAATCAAAATC
TAAGAGTGAACAACGTAAAGATCAAAGTGATTCAAACTCTGGATCGTATGGTTCTCAACAAAGTTCTTACAATAATACAC
AAGGTAACTCACAAGAAGCTCCCCGTAACCAACAATATCAAAATTTTGGAAACTCTGATCCATTTGAGAAGAGCGGACAA
CCAATTGATATTTCAGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.972

100

0.673
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.591
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.259

63.158

0.374

Multiple sequence alignment