Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IUZ65_RS15340 Genome accession   NZ_CP087590
Coordinates   3366564..3367196 (+) Length   210 a.a.
NCBI ID   WP_102523323.1    Uniprot ID   A0A2N8ZG72
Organism   Vibrio sp. VB16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3361564..3372196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS15315 (IUZ65_015315) - 3362037..3362633 (-) 597 WP_195704529.1 LysE family translocator -
  IUZ65_RS15320 (IUZ65_015320) - 3362761..3364152 (+) 1392 WP_195704530.1 PLP-dependent aminotransferase family protein -
  IUZ65_RS15325 (IUZ65_015325) - 3364149..3365120 (+) 972 WP_195704531.1 hydrolase -
  IUZ65_RS15330 (IUZ65_015330) - 3365136..3365348 (+) 213 WP_195704532.1 YheU family protein -
  IUZ65_RS15335 (IUZ65_015335) - 3365448..3366317 (+) 870 WP_195704533.1 phosphoribulokinase -
  IUZ65_RS15340 (IUZ65_015340) crp 3366564..3367196 (+) 633 WP_102523323.1 cAMP-activated global transcriptional regulator CRP Regulator
  IUZ65_RS15345 (IUZ65_015345) - 3367275..3367739 (-) 465 WP_195705138.1 GNAT family N-acetyltransferase -
  IUZ65_RS15350 (IUZ65_015350) groL 3367929..3369575 (-) 1647 WP_195704534.1 chaperonin GroEL -
  IUZ65_RS15355 (IUZ65_015355) - 3369645..3369935 (-) 291 WP_195704535.1 co-chaperone GroES -
  IUZ65_RS15360 (IUZ65_015360) - 3370189..3370458 (+) 270 WP_195704536.1 DUF3624 domain-containing protein -
  IUZ65_RS15365 (IUZ65_015365) - 3370486..3371970 (-) 1485 WP_231363593.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23598.34 Da        Isoelectric Point: 7.4009

>NTDB_id=630238 IUZ65_RS15340 WP_102523323.1 3366564..3367196(+) (crp) [Vibrio sp. VB16]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQTTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=630238 IUZ65_RS15340 WP_102523323.1 3366564..3367196(+) (crp) [Vibrio sp. VB16]
ATGGTTCTTGGTAAACCTCAAACCGATCCAACGTTAGAGTGGTTTCTTTCGCATTGTCATATTCATAAATATCCTTCCAA
AAGTACGCTTATCCACGCTGGAGAAAAAGCGGAAACTCTGTATTACATTGTGAAAGGCTCTGTAGCTGTGCTTATCAAGG
ATGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGAGACTTCATCGGTGAGCTAGGTCTATTCGAAGAAGAT
CAAGAGCGTACTGCATGGGTTCGTGCTAAATCACCATGTGAAGTAGCTGAAATTTCGTTTAAGAAATTCCGCCAGCTTAT
TCAAGTTAATCCTGACATTTTAATGCGTCTTTCAGCTCAAATGGCAAGCCGTCTACAAACGACTAGTCAAAAAGTTGGTG
ACTTAGCATTCTTAGATGTGACGGGACGTATTGCTCAAACACTTCTGAACTTAGCAAAACAACCAGATGCGATGACTCAT
CCAGACGGCATGCAAATTAAGATCACTCGTCAAGAGATTGGTCAGATTGTAGGTTGTTCACGTGAAACTGTTGGTCGTAT
TCTTAAGATGCTTGAAGAACAGAATTTAATTTCTGCTCACGGTAAAACTATCGTCGTTTACGGTACACGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8ZG72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467