Detailed information NTG0630234

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IUZ65_RS13795
• Genome accession: NZ_CP087590
• Coordinates: 3030436..3031305 (+)
• Length: 289 a.a.
• NCBI ID: WP_195704266.1
• Uniprot ID: -
• Organism: Vibrio sp. VB16
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3025436..3036305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUZ65_RS13770 (IUZ65_013770)	nadC	3026168..3027055 (+)	888	WP_195704262.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IUZ65_RS23415	-	3027332..3027835 (+)	504	WP_195704263.1	pilin	-
IUZ65_RS13785 (IUZ65_013785)	pilB	3027892..3029139 (+)	1248	WP_195704264.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
IUZ65_RS13790 (IUZ65_013790)	-	3029176..3030399 (+)	1224	WP_195704265.1	type II secretion system F family protein	-
IUZ65_RS13795 (IUZ65_013795)	pilD	3030436..3031305 (+)	870	WP_195704266.1	A24 family peptidase	Machinery gene
IUZ65_RS13800 (IUZ65_013800)	coaE	3031307..3031909 (+)	603	WP_195704267.1	dephospho-CoA kinase	-
IUZ65_RS13805 (IUZ65_013805)	zapD	3031948..3032688 (+)	741	WP_195704268.1	cell division protein ZapD	-
IUZ65_RS13810 (IUZ65_013810)	yacG	3032713..3032910 (+)	198	WP_195705124.1	DNA gyrase inhibitor YacG	-
IUZ65_RS13815 (IUZ65_013815)	rplS	3033029..3033382 (-)	354	WP_195704269.1	50S ribosomal protein L19	-
IUZ65_RS13820 (IUZ65_013820)	trmD	3033439..3034179 (-)	741	WP_195704270.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IUZ65_RS13825 (IUZ65_013825)	rimM	3034207..3034761 (-)	555	WP_195704271.1	ribosome maturation factor RimM	-
IUZ65_RS13830 (IUZ65_013830)	rpsP	3034780..3035028 (-)	249	WP_195704272.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32947.31 Da
• Isoelectric Point: 7.5680

>NTDB_id=630234 IUZ65_RS13795 WP_195704266.1 3030436..3031305(+) (pilD) [Vibrio sp. VB16]
MELFEYYPWLYPVFAGIFGLIVGSFLNVVIHRVPIMMEREWKQDCAETFPDLNIPLDNKKFNLSIPRSSCPRCKTPLRII
DNIPIISWLLLKGKCHHCKEPISIRYPLVELLTAIMSCTIAYYFELSYYSIALLFFSFALISATFIDLDTMLLPDSITLP
LTWFGLFLALIGWSPVSLQDAVIGAIAGYLCLWSVYWVFKIVTGKEGMGYGDFKLLAALGAWLGWQHLPMIVLLSSFVGL
IFGLIQLRLQKKGIDRQFPFGPYLAIAGWISLLWGNQIMVWYYSSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=630234 IUZ65_RS13795 WP_195704266.1 3030436..3031305(+) (pilD) [Vibrio sp. VB16]
ATGGAATTATTCGAGTATTACCCTTGGCTTTACCCTGTTTTCGCGGGGATATTTGGACTCATTGTCGGCAGTTTTTTAAA
TGTGGTAATACACCGCGTACCAATCATGATGGAGCGCGAATGGAAACAAGATTGTGCGGAAACATTCCCAGATCTTAATA
TCCCATTGGATAACAAAAAATTTAATTTAAGTATTCCTCGTTCTAGTTGCCCTCGATGCAAAACGCCATTACGTATAATT
GATAACATCCCAATAATAAGTTGGTTATTGCTCAAAGGAAAGTGCCATCATTGCAAAGAACCTATTAGTATTCGTTATCC
TTTGGTCGAGTTATTAACGGCAATAATGAGTTGCACAATTGCTTACTATTTTGAACTAAGTTACTACTCTATAGCTCTTC
TCTTCTTTTCTTTCGCATTAATCTCAGCAACGTTTATCGATCTCGATACCATGCTTCTTCCCGATAGCATCACCTTACCA
TTAACTTGGTTTGGTCTCTTCCTTGCGTTGATTGGGTGGAGCCCAGTCTCTTTGCAAGATGCCGTAATTGGAGCCATTGC
TGGGTACCTTTGTCTATGGAGCGTGTATTGGGTATTTAAGATAGTCACAGGTAAAGAAGGCATGGGATATGGCGATTTTA
AACTCCTCGCGGCACTTGGGGCTTGGTTAGGTTGGCAACACCTACCTATGATTGTGTTATTGTCTTCCTTTGTGGGACTC
ATATTCGGACTCATTCAATTACGCTTGCAAAAAAAAGGAATCGATAGACAGTTTCCCTTTGGTCCATATCTTGCTATTGC
TGGATGGATAAGTCTACTATGGGGAAATCAAATCATGGTCTGGTACTATTCTTCTGTATTAGGTATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	70.242	100	0.702
pilD	Vibrio cholerae strain A1552	68.403	99.654	0.682
pilD	Acinetobacter nosocomialis M2	51.111	93.426	0.478
pilD	Acinetobacter baumannii D1279779	50.37	93.426	0.471
pilD	Neisseria gonorrhoeae MS11	51.154	89.965	0.46