Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOZ77_RS17585 Genome accession   NZ_CP087588
Coordinates   3607681..3608115 (-) Length   144 a.a.
NCBI ID   WP_230280224.1    Uniprot ID   -
Organism   Croceicoccus sp. Ery15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3606503..3624015 3607681..3608115 within 0


Gene organization within MGE regions


Location: 3606503..3624015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ77_RS17570 - 3606503..3606868 (-) 366 WP_230280221.1 hypothetical protein -
  LOZ77_RS17575 - 3606880..3607305 (-) 426 WP_230280222.1 DUF1367 family protein -
  LOZ77_RS17580 - 3607302..3607670 (-) 369 WP_230280223.1 DUF1364 domain-containing protein -
  LOZ77_RS17585 ssb 3607681..3608115 (-) 435 WP_230280224.1 single-stranded DNA-binding protein Machinery gene
  LOZ77_RS17590 - 3608126..3608959 (-) 834 WP_230280225.1 ERF family protein -
  LOZ77_RS17595 - 3609340..3609831 (-) 492 WP_230280226.1 hypothetical protein -
  LOZ77_RS17600 - 3609828..3610325 (-) 498 WP_230280227.1 hypothetical protein -
  LOZ77_RS17875 - 3610366..3610494 (-) 129 WP_255671147.1 hypothetical protein -
  LOZ77_RS17605 - 3610669..3610818 (-) 150 WP_230280228.1 hypothetical protein -
  LOZ77_RS17610 - 3610815..3611186 (-) 372 WP_230280229.1 hypothetical protein -
  LOZ77_RS17615 - 3611183..3611632 (-) 450 WP_230280230.1 hypothetical protein -
  LOZ77_RS17620 - 3611629..3611925 (-) 297 WP_230280231.1 hypothetical protein -
  LOZ77_RS17625 - 3611922..3612275 (-) 354 WP_230280232.1 hypothetical protein -
  LOZ77_RS17630 - 3612272..3612601 (-) 330 WP_230280233.1 hypothetical protein -
  LOZ77_RS17635 - 3612598..3612909 (-) 312 WP_230280234.1 hypothetical protein -
  LOZ77_RS17640 - 3613004..3613393 (-) 390 WP_230280235.1 HIRAN domain-containing protein -
  LOZ77_RS17645 - 3613407..3613754 (-) 348 WP_230280236.1 hypothetical protein -
  LOZ77_RS17650 - 3613747..3613959 (-) 213 WP_230280237.1 hypothetical protein -
  LOZ77_RS17655 - 3613960..3614673 (-) 714 WP_230280238.1 S24 family peptidase -
  LOZ77_RS17660 - 3614722..3614937 (+) 216 WP_230280239.1 hypothetical protein -
  LOZ77_RS17665 - 3614934..3615476 (+) 543 WP_230280240.1 GIY-YIG nuclease family protein -
  LOZ77_RS17670 - 3615550..3615732 (-) 183 WP_230280241.1 hypothetical protein -
  LOZ77_RS17675 - 3615767..3616180 (+) 414 WP_230280242.1 hypothetical protein -
  LOZ77_RS17680 - 3616180..3616701 (+) 522 WP_230280243.1 hypothetical protein -
  LOZ77_RS17685 - 3616913..3617053 (+) 141 WP_230280244.1 hypothetical protein -
  LOZ77_RS17690 - 3617050..3617193 (+) 144 WP_230280245.1 hypothetical protein -
  LOZ77_RS17695 - 3617190..3617336 (+) 147 WP_230280246.1 hypothetical protein -
  LOZ77_RS17700 - 3617333..3617503 (+) 171 WP_230280247.1 hypothetical protein -
  LOZ77_RS17705 - 3617500..3617847 (+) 348 WP_230280248.1 hypothetical protein -
  LOZ77_RS17710 - 3617844..3618125 (+) 282 WP_230280249.1 hypothetical protein -
  LOZ77_RS17715 - 3618125..3619498 (+) 1374 WP_230280250.1 DnaB-like helicase C-terminal domain-containing protein -
  LOZ77_RS17720 - 3619500..3620087 (+) 588 WP_230280251.1 hypothetical protein -
  LOZ77_RS17725 - 3620084..3620260 (+) 177 WP_230280252.1 hypothetical protein -
  LOZ77_RS17730 - 3620260..3620625 (+) 366 WP_230280253.1 hypothetical protein -
  LOZ77_RS17735 - 3620639..3620959 (+) 321 WP_230280254.1 hypothetical protein -
  LOZ77_RS17740 - 3621111..3621632 (+) 522 WP_230280255.1 hypothetical protein -
  LOZ77_RS17745 - 3622452..3622760 (+) 309 WP_230280256.1 DUF5681 domain-containing protein -
  LOZ77_RS17750 - 3622741..3624015 (+) 1275 WP_230280257.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15599.22 Da        Isoelectric Point: 5.2145

>NTDB_id=630212 LOZ77_RS17585 WP_230280224.1 3607681..3608115(-) (ssb) [Croceicoccus sp. Ery15]
MSLNQCQFIGNLGADPEIRSTQSGTKIANMRIAVTEKYKDRDGNRQEKTEWITIAVFGDGLVGVIERYLRKGSKVFVQGK
WRTRKWQDQNGQDRYSTECVLQGPSATLQMLDGAQGGGNQGGGSSGGTGGSSGGYDDLDDDIPF

Nucleotide


Download         Length: 435 bp        

>NTDB_id=630212 LOZ77_RS17585 WP_230280224.1 3607681..3608115(-) (ssb) [Croceicoccus sp. Ery15]
ATGTCGCTTAATCAATGTCAATTCATCGGAAACTTGGGGGCTGACCCTGAAATTCGATCCACCCAATCGGGCACCAAGAT
TGCCAACATGCGCATCGCGGTAACCGAGAAATACAAAGACCGCGACGGGAACCGGCAGGAAAAAACCGAATGGATAACTA
TCGCCGTATTCGGTGACGGTCTGGTTGGAGTGATCGAACGCTATCTCCGCAAGGGGAGTAAGGTCTTTGTGCAGGGCAAG
TGGCGCACCAGAAAATGGCAAGACCAAAATGGGCAGGATCGGTATTCAACAGAATGCGTCTTGCAAGGGCCATCCGCCAC
GCTCCAAATGCTCGATGGCGCGCAAGGTGGCGGCAATCAGGGCGGCGGCTCGTCGGGCGGCACTGGTGGATCGTCAGGAG
GTTATGACGACCTCGATGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.353

100

0.521
  ssb Glaesserella parasuis strain SC1401

47.552

99.306

0.472
  ssb Neisseria meningitidis MC58

30.055

100

0.382