Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N596_RS08495 Genome accession   NC_022584
Coordinates   1785339..1787321 (+) Length   660 a.a.
NCBI ID   WP_023027622.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780339..1792321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS08480 (N596_08725) - 1782256..1782924 (+) 669 WP_023027620.1 fructose-6-phosphate aldolase -
  N596_RS08485 (N596_08730) - 1782939..1784030 (+) 1092 WP_042361352.1 glycerol dehydrogenase -
  N596_RS09805 (N596_08735) - 1784242..1784382 (+) 141 WP_006595056.1 bacteriocin -
  N596_RS08490 (N596_08740) - 1784477..1785151 (+) 675 WP_006595055.1 CPBP family intramembrane glutamic endopeptidase -
  N596_RS08495 (N596_08745) amiA3 1785339..1787321 (+) 1983 WP_023027622.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS08500 (N596_08750) leuS 1787606..1790107 (+) 2502 WP_023027623.1 leucine--tRNA ligase -
  N596_RS08505 (N596_08755) - 1790232..1790945 (+) 714 WP_023027624.1 MerR family transcriptional regulator -
  N596_RS08510 (N596_08760) - 1791269..1791427 (-) 159 WP_023027625.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  N596_RS08520 (N596_08770) - 1791642..1791830 (-) 189 WP_023027627.1 class IIb bacteriocin, lactobin A/cerein 7B family -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73579.39 Da        Isoelectric Point: 4.7758

>NTDB_id=62979 N596_RS08495 WP_023027622.1 1785339..1787321(+) (amiA3) [Streptococcus ilei]
MKKGKLLLATGALLLSVSALVACSQGGKSSSSDNQVFSYVYTQDPDTLDYSLSNKRSTSEFTGNAVDGLLEVDKYGNLIP
SLAKDWTVSKDGLTYTYKLRKGVKWVTAEGEEFGEVKAQDFVTGLQHAADKKSSALYLVQQSIKGLDDYVSGKTKDFSTV
GIKAVDDYTVQYTLNQPESFWNSKTTMGILMPVNKEFLDSKGDDYGQGTNPSSILYCGPYLIKAITSKSVVTLEKNPTYW
DADNVKISKVKLTYYDGQDSESLIRGFDNGDYTFARVFPNGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQAYEITT
KTTDAQKSSTKKAILNKDFRQAIMFAFNRKAYVAQANGEASADKVIRNTFTPPNFVQIDGKDFGESVEKNLEEYGDEWKG
VSVEDGKDTLYNPTKAKEEFAKAKEALQGQGVEFPIHLDLPVSSTYTEGVKQAQSFKQSIESTLGAENVVIDLNMVSEDD
LNRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYLDITSSKNGENANSYFGFDAGTNNAAAKEAGFDEYDQLIEDAHNET
KDVNDRYKKYAKAQAWLTDSALLIPIHSDGASPGVRKTVPYTAAFAWTGHKGQTFNYKYLELQDKVLKTKEYDEAREQWK
KEKEESNKKAQKELESHVED

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=62979 N596_RS08495 WP_023027622.1 1785339..1787321(+) (amiA3) [Streptococcus ilei]
ATGAAAAAAGGGAAGCTACTCTTAGCCACCGGCGCTCTGCTTTTGTCTGTAAGCGCACTGGTAGCCTGCTCACAAGGAGG
GAAATCTTCAAGTTCGGACAACCAGGTCTTTAGTTATGTATATACGCAAGATCCGGATACTTTGGATTATTCACTTTCTA
ATAAACGGTCGACTTCAGAATTTACAGGTAATGCTGTGGATGGTTTGTTAGAAGTTGACAAATATGGCAACTTAATCCCA
TCTCTTGCTAAGGATTGGACTGTTTCAAAAGATGGTCTGACCTATACCTATAAACTTCGTAAAGGGGTTAAATGGGTGAC
CGCTGAAGGGGAAGAATTCGGAGAAGTTAAGGCCCAAGACTTTGTAACGGGGCTTCAGCACGCAGCGGACAAGAAATCTT
CGGCCCTCTATCTCGTCCAACAATCTATCAAAGGGTTGGATGATTATGTCTCAGGGAAAACCAAAGACTTCTCAACAGTT
GGTATCAAAGCTGTCGATGACTATACTGTTCAATACACCTTGAACCAACCAGAAAGTTTCTGGAATTCAAAAACCACCAT
GGGCATTTTGATGCCAGTCAATAAAGAATTCTTAGATTCTAAGGGAGATGACTACGGTCAAGGTACGAACCCTTCTAGTA
TTCTTTATTGTGGTCCTTATTTGATCAAAGCTATCACCTCTAAATCTGTTGTGACGCTTGAAAAGAACCCAACCTATTGG
GATGCGGATAATGTAAAAATTTCTAAGGTTAAGCTGACCTATTATGATGGACAAGATTCAGAATCTTTGATCCGTGGATT
TGATAACGGAGACTATACCTTTGCCCGTGTCTTCCCAAATGGCTCTAACTATAAGAGTGTAGAGAAGAAACACAAAGATG
ACATTGTCTTCAGTGACCAAGGATCCTCTACTTATAACTTGTCTTTCAACATTGACCGTCAAGCTTATGAGATTACGACG
AAGACGACAGATGCTCAAAAGAGCTCAACCAAGAAAGCAATTTTGAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTT
CAACCGCAAGGCCTATGTAGCGCAAGCCAATGGGGAAGCATCTGCAGACAAGGTCATCCGCAACACCTTCACTCCTCCAA
ACTTTGTTCAAATTGATGGCAAAGATTTCGGTGAGTCTGTAGAGAAAAACTTAGAAGAATATGGTGATGAATGGAAAGGT
GTTTCTGTCGAAGATGGAAAAGATACCCTTTACAATCCAACCAAGGCCAAGGAAGAGTTTGCCAAGGCTAAAGAAGCCCT
TCAAGGCCAAGGGGTAGAGTTCCCGATTCATTTGGACCTCCCTGTTTCATCAACCTATACAGAAGGAGTCAAGCAAGCTC
AATCCTTTAAACAGTCGATTGAATCTACCCTAGGAGCAGAAAATGTCGTCATCGACTTGAACATGGTATCTGAGGACGAT
CTTAATCGAGTGACCTACTTTGCTGAAAATGCTTCCCAACAAGACTGGGATTTGAACAACAACTTAGGTTGGGGACCAGA
CTATACTGATCCATCTTCTTACCTAGATATCACAAGCTCTAAGAATGGTGAAAATGCCAATTCCTACTTTGGATTTGATG
CGGGAACGAATAACGCAGCTGCTAAAGAAGCTGGTTTTGATGAATACGATCAACTGATCGAAGACGCGCACAATGAAACA
AAAGACGTCAACGACCGCTATAAAAAATATGCTAAAGCTCAGGCTTGGTTGACTGATAGTGCCCTCTTGATTCCAATTCA
TTCAGATGGAGCTTCTCCAGGTGTTCGTAAGACAGTTCCATACACAGCTGCCTTTGCTTGGACAGGACACAAGGGTCAAA
CCTTCAACTACAAGTACTTGGAATTGCAAGACAAAGTCTTGAAAACCAAGGAGTACGATGAAGCGCGTGAACAATGGAAG
AAAGAAAAAGAAGAATCCAATAAGAAAGCTCAAAAAGAACTAGAAAGTCACGTAGAGGACTAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.219

100

0.553
  amiA3 Streptococcus thermophilus LMG 18311

55.068

100

0.552
  amiA Streptococcus salivarius strain HSISS4

55

100

0.55

Multiple sequence alignment