Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECKY1497_RS14300 Genome accession   NZ_AP019803
Coordinates   2990937..2991674 (+) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain KY 1497     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2985937..2996674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECKY1497_RS14285 (ECKY1497_027290) clpC 2986391..2988964 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECKY1497_RS14290 (ECKY1497_027300) yfiH 2989094..2989825 (-) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  ECKY1497_RS14295 (ECKY1497_027310) rluD 2989822..2990802 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECKY1497_RS14300 (ECKY1497_027320) comL 2990937..2991674 (+) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  ECKY1497_RS14305 (ECKY1497_027330) raiA 2991945..2992286 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECKY1497_RS14310 pheL 2992390..2992437 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECKY1497_RS14315 (ECKY1497_027340) pheA 2992536..2993696 (+) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECKY1497_RS14320 (ECKY1497_027350) tyrA 2993739..2994860 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECKY1497_RS14325 (ECKY1497_027360) aroF 2994871..2995941 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECKY1497_RS14330 (ECKY1497_027370) yfiL 2996151..2996516 (+) 366 WP_001314943.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=62967 ECKY1497_RS14300 WP_000197689.1 2990937..2991674(+) (comL) [Escherichia coli strain KY 1497]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=62967 ECKY1497_RS14300 WP_000197689.1 2990937..2991674(+) (comL) [Escherichia coli strain KY 1497]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment