Detailed information    

insolico Bioinformatically predicted

Overview


Name   comR/comR2   Type   Regulator
Locus tag   N596_RS07110 Genome accession   NC_022584
Coordinates   1535723..1536205 (+) Length   160 a.a.
NCBI ID   WP_023024841.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1530723..1541205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS07085 (N596_07280) tilS 1531288..1532562 (+) 1275 WP_023027437.1 tRNA lysidine(34) synthetase TilS -
  N596_RS07090 (N596_07285) hpt 1532568..1533110 (+) 543 WP_023027438.1 hypoxanthine phosphoribosyltransferase -
  N596_RS07095 (N596_07290) ftsH 1533121..1535094 (+) 1974 WP_023024839.1 ATP-dependent zinc metalloprotease FtsH -
  N596_RS07110 (N596_07300) comR/comR2 1535723..1536205 (+) 483 WP_023024841.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 160 a.a.        Molecular weight: 19881.79 Da        Isoelectric Point: 9.1657

>NTDB_id=62966 N596_RS07110 WP_023024841.1 1535723..1536205(+) (comR/comR2) [Streptococcus ilei]
MNFKKSYEKVKWIVWKCEKEFYIHLWDHSDWEQEGRLVLYELQISNPEVEENEEILLTYFKTKFRNHIKDKVRKQESDKR
KLNKVPYTEIGEISHRLRSKELFLDELVLLRGALKEFRENLTDQEKEDYDKLLMNQRFSGRAKMRRRLQEYLKDFKDHHL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=62966 N596_RS07110 WP_023024841.1 1535723..1536205(+) (comR/comR2) [Streptococcus ilei]
ATGAACTTTAAAAAATCATATGAAAAAGTAAAATGGATAGTATGGAAATGTGAAAAGGAATTTTATATTCATCTTTGGGA
TCACTCAGATTGGGAACAAGAAGGTAGACTGGTCTTATATGAGCTACAAATAAGTAATCCTGAAGTAGAAGAAAATGAAG
AAATTCTATTAACCTACTTCAAAACAAAGTTTCGCAATCATATAAAAGATAAAGTTAGAAAACAAGAGAGTGATAAAAGG
AAGTTAAATAAGGTACCTTATACAGAGATTGGAGAAATTAGTCATCGACTTCGATCAAAAGAACTCTTTTTGGATGAACT
AGTCCTGTTAAGAGGAGCCCTAAAAGAATTCCGAGAAAACCTAACCGATCAGGAAAAAGAAGACTATGATAAACTTCTGA
TGAATCAACGTTTTTCTGGACGAGCAAAAATGCGGAGAAGACTCCAAGAATACTTGAAAGATTTCAAGGATCATCATTTA
TGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

50.968

96.875

0.494

  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

50.968

96.875

0.494

  comX/sigX Streptococcus suis D9

50.641

97.5

0.494

  comX/sigX Streptococcus suis isolate S10

50.641

97.5

0.494

  comX/sigX Streptococcus suis P1/7

50.641

97.5

0.494

  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

45.098

95.625

0.431

  comX/comX2 Streptococcus pneumoniae TIGR4

44.444

95.625

0.425

  comX/comX1 Streptococcus pneumoniae TIGR4

44.444

95.625

0.425

  comX/comX2 Streptococcus pneumoniae R6

43.791

95.625

0.419

  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

43.791

95.625

0.419

  comX/comX2 Streptococcus pneumoniae Rx1

43.791

95.625

0.419

  comX/comX1 Streptococcus pneumoniae Rx1

43.791

95.625

0.419

  comX/comX2 Streptococcus pneumoniae D39

43.791

95.625

0.419

  comX/comX1 Streptococcus pneumoniae D39

43.791

95.625

0.419

  comX/comX1 Streptococcus pneumoniae R6

43.791

95.625

0.419

  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

43.791

95.625

0.419

  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

43.137

95.625

0.412

  comX/sigX Streptococcus mutans UA159

41.667

97.5

0.406

  comX Streptococcus thermophilus LMG 18311

41.83

95.625

0.4

  comX Streptococcus thermophilus LMD-9

41.83

95.625

0.4

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40

96.875

0.388

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40

96.875

0.388

  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

96.875

0.388

  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

96.875

0.388

  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

96.875

0.388

  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

96.875

0.388

  comX Streptococcus salivarius SK126

39.49

98.125

0.387

  comX/sigX Streptococcus salivarius strain HSISS4

39.49

98.125

0.387


Multiple sequence alignment