Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N596_RS05330 Genome accession   NC_022584
Coordinates   1110911..1111405 (-) Length   164 a.a.
NCBI ID   WP_006595680.1    Uniprot ID   A0A4Z1DUY6
Organism   Streptococcus ilei     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1105911..1116405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS05310 (N596_05465) - 1108116..1109060 (+) 945 WP_042361217.1 magnesium transporter CorA family protein -
  N596_RS05315 (N596_05470) - 1109089..1109763 (+) 675 WP_023027207.1 DUF1129 family protein -
  N596_RS05320 (N596_05475) - 1109801..1110319 (-) 519 WP_023027208.1 GNAT family N-acetyltransferase -
  N596_RS05325 (N596_05480) rpsR 1110630..1110869 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  N596_RS05330 (N596_05485) ssb 1110911..1111405 (-) 495 WP_006595680.1 single-stranded DNA-binding protein Machinery gene
  N596_RS05335 (N596_05490) rpsF 1111432..1111722 (-) 291 WP_023024266.1 30S ribosomal protein S6 -
  N596_RS05340 (N596_05495) - 1112000..1113052 (+) 1053 WP_023024269.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  N596_RS05345 (N596_05500) - 1113039..1113941 (+) 903 WP_023024271.1 phosphodiester glycosidase family protein -
  N596_RS05350 (N596_05505) - 1113922..1114338 (+) 417 WP_081697810.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17849.59 Da        Isoelectric Point: 4.7079

>NTDB_id=62957 N596_RS05330 WP_006595680.1 1110911..1111405(-) (ssb) [Streptococcus ilei]
MINNVVLVGRMTRDAELRYTPQNQAVATFSLAVNRNFKNQNGERDADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRANREGQAGGGYASAGGFAGNAAPSFGGSEPSNATPNFGRDDNPFGANPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=62957 N596_RS05330 WP_006595680.1 1110911..1111405(-) (ssb) [Streptococcus ilei]
ATGATTAACAATGTTGTACTTGTAGGTCGTATGACTCGAGATGCTGAACTTCGTTATACCCCTCAAAATCAGGCTGTTGC
GACATTCTCACTTGCTGTTAACCGTAATTTTAAAAACCAAAATGGTGAACGAGATGCGGACTTTATCAACTGTGTGATTT
GGCGTCAACAAGCTGAAAATTTAGCAAATTGGGCTAAAAAGGGTGCCTTAGTTGGGATTACAGGTCGTATCCAGACTCGT
AATTATGAGAATCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCGGACAGCTTCCAATTATTGGAAAGCCGCGC
GAATCGTGAAGGACAAGCAGGTGGTGGTTATGCCTCTGCTGGAGGATTTGCAGGAAATGCAGCTCCAAGCTTTGGAGGAT
CTGAACCATCTAATGCAACACCAAACTTTGGACGTGATGACAATCCATTCGGAGCTAATCCAATGGACATCTCGGATGAC
GATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z1DUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.897

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment