Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N596_RS03810 Genome accession   NC_022584
Coordinates   776965..778965 (-) Length   666 a.a.
NCBI ID   WP_023027020.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 771965..783965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS03800 (N596_03930) trxA 773371..773685 (-) 315 WP_006595996.1 thioredoxin -
  N596_RS03805 (N596_03935) - 773780..776851 (-) 3072 WP_023027019.1 CocE/NonD family hydrolase -
  N596_RS03810 (N596_03940) amiA3 776965..778965 (-) 2001 WP_023027020.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS03815 (N596_03945) trpA 779075..779860 (-) 786 WP_023027021.1 tryptophan synthase subunit alpha -
  N596_RS03820 (N596_03950) trpB 779863..781065 (-) 1203 WP_023027022.1 tryptophan synthase subunit beta -
  N596_RS03825 (N596_03955) - 781062..781643 (-) 582 WP_023027023.1 phosphoribosylanthranilate isomerase -
  N596_RS03830 (N596_03960) trpC 781630..782397 (-) 768 WP_023027024.1 indole-3-glycerol phosphate synthase TrpC -
  N596_RS03835 (N596_03965) trpD 782394..783398 (-) 1005 WP_023027025.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74000.19 Da        Isoelectric Point: 4.7037

>NTDB_id=62949 N596_RS03810 WP_023027020.1 776965..778965(-) (amiA3) [Streptococcus ilei]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDK
YGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTADDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEGKT
SDFSNVGIKAVDDHTLQITLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMS
KNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNIDRQ
SYKYTSKTTDEEKSSTKKALLNKDFRQSISFAFDREAYAAQANGKDGASKLIRNLYIPPTFVQADGKSFGEMVKSELVTY
GDEWKDANLDDGQNGLYNAKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESTLGKENVVVDIH
MVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKMVT
EAGAETQDLNKRYEKYAAAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKAVTTEDYN
KALEKWKKEQAESNQKAQEELKNHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=62949 N596_RS03810 WP_023027020.1 776965..778965(-) (amiA3) [Streptococcus ilei]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGCAGCATGTTCTGGTGGTTC
TAAATCATCTAGCTCTAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCATACGTCTATGAGACAGAACCTGAAAACT
TGAACTACATCACATCTGGTAAAGCTGCAACCCACGAAATCACAGGAAACTTGATTGATGGATTGTTTGAAAACGACAAG
TATGGAAATTTGATTCCTTCACTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACTTCGTGA
TGATGCTAAATGGTATGATTCAGAAGGGGAAGAGTATGCGGACGTGACAGCTGATGACTTCGTTGCAGGTATCAAATATG
CCGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAATTCCATCAAGGGCTTGAATGATTATGTTGAAGGAAAGACC
TCTGATTTCTCAAATGTTGGCATTAAAGCAGTCGATGATCATACCCTTCAAATCACTTTGAACCAGGCAGAGCCTTTCTG
GAATTCTAAGTTGACTCTTGGGATCACCTTCCCTATCAATGAGAAATTCGTAGAATCTAAAGGGGATAAATTTGCCCAAG
CAAGTGACACTAGCTCTCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTCACTTCTAAATCATCTATCGAGATGAGC
AAGAATGAAAACTACTGGGATAAAGACAATGTTCACATCACAGATGTTAAGCTAGAATACTATGATGGTCAAGACCAAAG
TAAATTGGCCAACTCATTTGAGGACAACGCTCTTAGCCTTGCTAAATTGTTCCCAACTGGACCTGGATTTACTGACCAAG
CTAAGAAGTTTAAAGATGAAATCATCTACACTCCTCAAGATGCCAGCACCTTCGTTATCGGTGTCAACATCGATCGTCAG
TCATACAAGTACACATCAAAAACAACAGATGAAGAAAAATCATCTACTAAGAAAGCTCTCTTGAACAAGGACTTCCGTCA
ATCAATCAGCTTTGCCTTTGACCGTGAAGCCTATGCTGCCCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGATCCGTA
ACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGCAAGTCCTTCGGTGAGATGGTTAAATCTGAGTTGGTGACTTAT
GGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAAAATGGTCTTTACAACGCAAAACAAGCCAAAGAAGAGTTTGC
GAAAGCTAAATCTGCACTTGAAGCAGATGGTGTGAAATTCCCAATCCACTTGGATATGCCAGTAGACCAAACGACTCAAT
CTAAGGTTCAACGTGCTCAATCCTTCAAACAATCGGTTGAAAGTACGCTTGGAAAAGAAAACGTCGTTGTCGACATCCAT
ATGGTATCCAAAGAAGACCTCTTGAACGTAACGCTCTTTGCTGCAAAAGCAGAAGACGAAGACTGGGATATCTCAGATAA
CGTTGGATGGAGCCCTGACTATCAAGACCCATCAACTTACCTTGATATCTTGAAAGCATCTTCTGGTGAAAACACTCGTA
CCTTCCTTGGATTTGACCCAAGCGAAAACAATGAGGCAGCTAAGAAAGTTGGTTTGTACGACTTTGAGAAGATGGTAACA
GAAGCAGGAGCTGAAACACAAGACCTTAACAAACGTTATGAGAAATATGCTGCAGCTCAAGCTTGGTTGACAGATAGTGC
TTTGGTCATCCCAACAACATCTAAGACTGGTCGTCCATTCTTGACTCGTGTTGTACCATTTTCAGCACCATTTGGCTGGA
CCGGTGGTAAAGGGAAAGACAACGTTGTCTATAAAGGTATGGAACTTCAAGACAAGGCTGTAACAACCGAAGACTACAAC
AAAGCTCTTGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAAACCATGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.372

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.372

100

0.565
  amiA3 Streptococcus thermophilus LMG 18311

56.222

100

0.563

Multiple sequence alignment