Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N596_RS00520 Genome accession   NC_022584
Coordinates   88365..90329 (-) Length   654 a.a.
NCBI ID   WP_023026499.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 83365..95329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS00500 (N596_00515) - 84527..84790 (-) 264 WP_003006096.1 SemiSWEET family transporter -
  N596_RS00505 (N596_00520) - 85071..85328 (+) 258 WP_003011864.1 SemiSWEET family transporter -
  N596_RS00510 (N596_00525) - 85504..86271 (+) 768 WP_006597128.1 ABC transporter ATP-binding protein -
  N596_RS00515 (N596_00530) - 86264..88255 (+) 1992 WP_023026497.1 FtsX-like permease family protein -
  N596_RS00520 (N596_00535) amiA3 88365..90329 (-) 1965 WP_023026499.1 peptide ABC transporter substrate-binding protein Regulator
  N596_RS00525 (N596_00540) - 90563..90892 (+) 330 WP_023026501.1 PadR family transcriptional regulator -
  N596_RS00530 (N596_00545) - 90889..91719 (+) 831 WP_023026503.1 hypothetical protein -
  N596_RS00535 (N596_00550) - 91820..92056 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  N596_RS00540 (N596_00555) - 92049..92747 (+) 699 WP_023026505.1 3-oxoacyl-ACP reductase -
  N596_RS00545 (N596_00560) - 92924..93262 (+) 339 WP_023026507.1 hypothetical protein -
  N596_RS00550 (N596_00565) - 93441..93875 (+) 435 WP_258025869.1 immunity protein -
  N596_RS00555 (N596_00570) - 93895..94407 (+) 513 WP_042361005.1 Imm26 family immunity protein -
  N596_RS00560 (N596_00575) - 94424..95050 (+) 627 WP_023026511.1 hypothetical protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72919.96 Da        Isoelectric Point: 4.6735

>NTDB_id=62937 N596_RS00520 WP_023026499.1 88365..90329(-) (amiA3) [Streptococcus ilei]
MKKSKLAFLAGVTVASALFLASCGSSSKSSQTNTYSYVFSTDPDSLNYLLSNRSTTSDVTTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADNKSDALYLVQNSVAGLDDYVTGKNTDFSKVGV
KAVDDHTLQYTLAQPESFWNSKLTTSTMMPVNEKFLKSAGKDFGSVKPSGILYNGPYYLKSFTSKSLMEFTKNENYYDKD
NVKIENIKLTYFDGSDQDYLARNFSDGNLTTARLFPTSSTFSTIEKKFKDNIVYSPQDATVYYVYFNVNRQNYGHTEKTT
DDQKNQTKTALQNKNFRQAINFALDRTSLSAQSNGKDGASKTLRTLLVPPTFVQVDNKDFGSVVEEKLAATGDDWKDVSL
ADAQDSMFNADKAKAQFAKAKEELQAQGVQFPIHIDYVVDQSSASIVQQADSMKDSIEKTLGKENVVVDVQKMSTEDADN
ATYFAQSPDQKDFDMDIAGWGPDFQDPSTYLDIFNPVDGSALAGMGINPSTDQSLIEKLGLNEYKQLLDDANAEQLDTKT
RYEKYAVAQAWLTDNAFALPVYSKGAVPSITKIKPFTKAFSLIGIKDGASYYKYMELQSDTVTTADYDKAYKNWLKEKEE
TNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=62937 N596_RS00520 WP_023026499.1 88365..90329(-) (amiA3) [Streptococcus ilei]
ATGAAAAAATCTAAACTAGCTTTCCTTGCAGGTGTCACGGTTGCTTCAGCCCTGTTCCTTGCTTCATGTGGATCATCTTC
AAAATCTTCTCAGACAAACACTTACTCATACGTGTTTAGTACTGATCCAGATTCTTTGAACTACCTCCTTTCAAACCGTT
CTACAACAAGTGACGTTACAACTAACTTGGTTGATGGATTGTTTGAAAATGACCAATATGGTAATCTCGTCCCTGCACTA
GCGGAAGATTGGTCTGTCTCTAAAGACGGATTAACCTACACTTATAAACTCCGTAAAGATGCAAAATGGTACGACTCAGA
AGGAAACGAATATGCAGATGTCACTGCACAGGACTTCGTCACTTCTCTTAAGTATGTAGCTGACAACAAGTCAGATGCCC
TCTACTTGGTTCAAAACTCAGTAGCCGGCCTGGATGACTATGTCACTGGTAAAAATACAGACTTCTCTAAAGTTGGGGTC
AAAGCCGTTGATGACCATACCCTCCAATACACCTTGGCTCAACCTGAATCCTTCTGGAATTCTAAATTGACAACTTCGAC
CATGATGCCTGTCAATGAAAAATTCCTCAAATCTGCAGGTAAAGACTTCGGTAGCGTCAAACCTTCTGGAATCCTTTACA
ACGGTCCTTACTACTTGAAATCCTTCACTTCCAAATCTTTGATGGAGTTCACCAAGAACGAGAACTACTACGACAAAGAC
AATGTGAAGATTGAAAATATCAAATTGACCTACTTCGATGGTTCTGACCAAGACTACCTTGCTCGTAACTTCTCTGATGG
AAACTTGACCACTGCGCGTCTCTTCCCAACGAGCTCAACATTTAGTACCATTGAGAAAAAATTCAAAGACAATATCGTTT
ATTCACCACAAGATGCGACTGTCTACTATGTTTACTTCAACGTAAACCGTCAAAACTACGGTCATACTGAGAAAACAACA
GACGACCAGAAGAACCAAACCAAAACAGCTCTTCAAAACAAAAACTTCCGTCAAGCCATCAACTTTGCCCTTGATCGTAC
TTCACTAAGTGCCCAATCAAACGGGAAAGATGGCGCTAGCAAAACCCTTCGTACGCTTCTTGTACCTCCAACATTTGTGC
AAGTAGACAACAAAGACTTCGGTAGCGTTGTCGAAGAAAAACTTGCTGCAACAGGAGATGATTGGAAGGATGTCAGCCTA
GCTGATGCGCAAGATAGCATGTTCAATGCGGACAAGGCCAAAGCACAATTTGCCAAAGCCAAAGAAGAGCTCCAAGCGCA
AGGTGTCCAATTCCCAATCCACATCGACTATGTAGTTGACCAGTCTTCTGCTAGCATTGTGCAACAAGCTGATTCAATGA
AAGACTCCATCGAAAAAACATTAGGAAAAGAAAATGTCGTCGTGGATGTTCAGAAAATGTCTACGGAAGATGCGGACAAT
GCAACCTACTTCGCTCAAAGTCCTGATCAAAAAGACTTTGATATGGATATCGCTGGTTGGGGACCTGACTTCCAAGACCC
ATCAACTTACTTGGATATCTTCAATCCAGTCGATGGTTCAGCCTTAGCAGGAATGGGAATCAATCCGTCAACTGACCAAT
CCCTAATTGAAAAACTAGGTTTGAACGAGTACAAACAACTATTGGATGATGCCAATGCGGAACAATTGGATACCAAAACT
CGTTATGAAAAATATGCTGTTGCTCAAGCTTGGTTGACAGACAATGCCTTTGCACTTCCTGTCTACTCTAAGGGTGCTGT
CCCTTCTATCACGAAGATCAAACCATTTACAAAAGCATTCTCCTTGATTGGTATCAAAGACGGGGCTAGCTACTACAAGT
ACATGGAATTACAAAGTGATACAGTCACAACGGCTGACTACGACAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
ACCAATAAAAAAGCACAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.414

100

0.538
  amiA3 Streptococcus thermophilus LMG 18311

53.111

100

0.535
  amiA Streptococcus salivarius strain HSISS4

53.12

100

0.534

Multiple sequence alignment