Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LOZ87_RS11720 Genome accession   NZ_CP087391
Coordinates   2433536..2433871 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2428536..2438871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS11700 (LOZ87_11700) gcvT 2429142..2430242 (-) 1101 WP_039063314.1 glycine cleavage system aminomethyltransferase GcvT -
  LOZ87_RS11705 (LOZ87_11705) - 2430666..2432336 (+) 1671 WP_007408331.1 DEAD/DEAH box helicase -
  LOZ87_RS11710 (LOZ87_11710) - 2432358..2433152 (+) 795 WP_007408330.1 YqhG family protein -
  LOZ87_RS11715 (LOZ87_11715) sinI 2433329..2433502 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  LOZ87_RS11720 (LOZ87_11720) sinR 2433536..2433871 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LOZ87_RS11725 (LOZ87_11725) tasA 2433919..2434704 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  LOZ87_RS11730 (LOZ87_11730) sipW 2434769..2435353 (-) 585 WP_007408328.1 signal peptidase I SipW -
  LOZ87_RS11735 (LOZ87_11735) tapA 2435325..2435996 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  LOZ87_RS11740 (LOZ87_11740) - 2436255..2436584 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  LOZ87_RS11745 (LOZ87_11745) - 2436624..2436803 (-) 180 WP_003153093.1 YqzE family protein -
  LOZ87_RS11750 (LOZ87_11750) comGG 2436860..2437237 (-) 378 WP_039063315.1 competence type IV pilus minor pilin ComGG -
  LOZ87_RS11755 (LOZ87_11755) comGF 2437238..2437738 (-) 501 WP_258038902.1 competence type IV pilus minor pilin ComGF -
  LOZ87_RS11760 (LOZ87_11760) comGE 2437647..2437961 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  LOZ87_RS11765 (LOZ87_11765) comGD 2437945..2438382 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  LOZ87_RS11770 (LOZ87_11770) comGC 2438372..2438680 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=629275 LOZ87_RS11720 WP_003153104.1 2433536..2433871(+) (sinR) [Bacillus amyloliquefaciens strain ZF57]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=629275 LOZ87_RS11720 WP_003153104.1 2433536..2433871(+) (sinR) [Bacillus amyloliquefaciens strain ZF57]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991