Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LOZ87_RS07195 Genome accession   NZ_CP087391
Coordinates   1367597..1368061 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362597..1373061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS07175 (LOZ87_07175) - 1363078..1364898 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  LOZ87_RS07180 (LOZ87_07180) - 1364879..1366092 (-) 1214 Protein_1356 aminotransferase A -
  LOZ87_RS07185 (LOZ87_07185) - 1366293..1366454 (-) 162 WP_007409608.1 hypothetical protein -
  LOZ87_RS07190 (LOZ87_07190) cheV 1366643..1367554 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  LOZ87_RS07195 (LOZ87_07195) kre 1367597..1368061 (-) 465 WP_003154622.1 YkyB family protein Regulator
  LOZ87_RS07200 (LOZ87_07200) - 1368184..1369476 (-) 1293 WP_007611093.1 MFS transporter -
  LOZ87_RS07205 (LOZ87_07205) - 1369552..1370046 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  LOZ87_RS07210 (LOZ87_07210) - 1370121..1370984 (-) 864 WP_015239758.1 metallophosphoesterase -
  LOZ87_RS07215 (LOZ87_07215) fadH 1371129..1371893 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  LOZ87_RS07220 (LOZ87_07220) - 1372007..1372555 (+) 549 WP_039062994.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=629263 LOZ87_RS07195 WP_003154622.1 1367597..1368061(-) (kre) [Bacillus amyloliquefaciens strain ZF57]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=629263 LOZ87_RS07195 WP_003154622.1 1367597..1368061(-) (kre) [Bacillus amyloliquefaciens strain ZF57]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929