Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LO000_RS18275 Genome accession   NZ_CP087354
Coordinates   3749871..3750689 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3744871..3755689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS18260 pilE 3745090..3745515 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  LO000_RS18265 pilY2 3745512..3745994 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  LO000_RS18270 pilY1 3746005..3749859 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  LO000_RS18275 pilX 3749871..3750689 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO000_RS18280 pilW 3750686..3751687 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO000_RS18285 pilV 3751688..3752248 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO000_RS18290 fimU 3752242..3752715 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO000_RS18295 ispH 3752885..3753835 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO000_RS18300 gmk 3753958..3754587 (+) 630 WP_000015937.1 guanylate kinase -
  LO000_RS18305 rpoZ 3754660..3754938 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO000_RS18310 - 3754977..3755107 (+) 131 Protein_3573 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=629127 LO000_RS18275 WP_000149374.1 3749871..3750689(-) (pilX) [Acinetobacter baumannii strain DB002]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=629127 LO000_RS18275 WP_000149374.1 3749871..3750689(-) (pilX) [Acinetobacter baumannii strain DB002]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993