Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LO000_RS18260 Genome accession   NZ_CP087354
Coordinates   3745090..3745515 (-) Length   141 a.a.
NCBI ID   WP_000788336.1    Uniprot ID   A0A0J0ZME6
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3740090..3750515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS18230 - 3740623..3741654 (+) 1032 WP_001189459.1 lipase secretion chaperone -
  LO000_RS18235 - 3741769..3742710 (+) 942 WP_085916958.1 triacylglycerol lipase -
  LO000_RS18240 rplS 3742762..3743130 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO000_RS18245 trmD 3743338..3744078 (-) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO000_RS18250 rimM 3744124..3744672 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO000_RS18255 rpsP 3744692..3744943 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO000_RS18260 pilE 3745090..3745515 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  LO000_RS18265 pilY2 3745512..3745994 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  LO000_RS18270 pilY1 3746005..3749859 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15175.41 Da        Isoelectric Point: 7.8144

>NTDB_id=629124 LO000_RS18260 WP_000788336.1 3745090..3745515(-) (pilE) [Acinetobacter baumannii strain DB002]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTAIPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=629124 LO000_RS18260 WP_000788336.1 3745090..3745515(-) (pilE) [Acinetobacter baumannii strain DB002]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCAACTATACAATCAATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAATACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAGGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZME6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.071

100

0.901
  comF Acinetobacter baylyi ADP1

49.286

99.291

0.489