Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO000_RS18290 Genome accession   NZ_CP087354
Coordinates   3752242..3752715 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3747242..3757715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS18275 pilX 3749871..3750689 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO000_RS18280 pilW 3750686..3751687 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO000_RS18285 pilV 3751688..3752248 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO000_RS18290 fimU 3752242..3752715 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO000_RS18295 ispH 3752885..3753835 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO000_RS18300 gmk 3753958..3754587 (+) 630 WP_000015937.1 guanylate kinase -
  LO000_RS18305 rpoZ 3754660..3754938 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO000_RS18310 - 3754977..3755107 (+) 131 Protein_3573 hypothetical protein -
  LO000_RS18315 - 3755147..3757252 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=629130 LO000_RS18290 WP_001214060.1 3752242..3752715(-) (fimU) [Acinetobacter baumannii strain DB002]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=629130 LO000_RS18290 WP_001214060.1 3752242..3752715(-) (fimU) [Acinetobacter baumannii strain DB002]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987