Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N597_RS05615 Genome accession   NC_022582
Coordinates   1129682..1131682 (-) Length   666 a.a.
NCBI ID   WP_023023738.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124682..1136682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS05605 (N597_05790) trxA 1126088..1126402 (-) 315 WP_006595996.1 thioredoxin -
  N597_RS05610 (N597_05795) - 1126497..1129568 (-) 3072 WP_042507473.1 CocE/NonD family hydrolase -
  N597_RS05615 (N597_05800) amiA3 1129682..1131682 (-) 2001 WP_023023738.1 peptide ABC transporter substrate-binding protein Regulator
  N597_RS05620 (N597_05805) trpA 1131792..1132577 (-) 786 WP_023023740.1 tryptophan synthase subunit alpha -
  N597_RS05625 (N597_05810) trpB 1132580..1133782 (-) 1203 WP_023023742.1 tryptophan synthase subunit beta -
  N597_RS05630 (N597_05815) - 1133779..1134360 (-) 582 WP_023023743.1 phosphoribosylanthranilate isomerase -
  N597_RS05635 (N597_05820) trpC 1134347..1135114 (-) 768 WP_023023745.1 indole-3-glycerol phosphate synthase TrpC -
  N597_RS05640 (N597_05825) trpD 1135111..1136115 (-) 1005 WP_023023746.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 73998.17 Da        Isoelectric Point: 4.6782

>NTDB_id=62912 N597_RS05615 WP_023023738.1 1129682..1131682(-) (amiA3) [Streptococcus ilei]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDK
YGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTADDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEGKT
SDFSNVGIKAVDDHTLQITLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMS
KNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNIDRQ
SYKYTSKTTDEEKSSTKKALLNKDFRQAISFAFDREAYAAQANGKDGASKLIRNLYIPPTFVQADGKSFGEMVKSELVTY
GDEWKDANLDDGQNGLYNAKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESTLGKENVVVDIH
MVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKMVD
EAGAETQDLNKRYEKYAAAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKAVTTEDYN
KALEKWKKEQAESNQKAQEELKNHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=62912 N597_RS05615 WP_023023738.1 1129682..1131682(-) (amiA3) [Streptococcus ilei]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGCAGCATGTTCTGGTGGTTC
TAAATCATCTAGCTCTAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCATACGTCTATGAGACAGAACCTGAAAACT
TGAACTACATCACATCTGGTAAAGCTGCAACCCACGAAATCACAGGAAACTTGATTGATGGATTGTTTGAAAACGACAAG
TATGGAAATTTGATTCCTTCACTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACTTCGTGA
TGATGCTAAATGGTATGATTCAGAAGGGGAAGAGTATGCGGACGTGACAGCTGATGACTTCGTTGCAGGTATCAAATATG
CCGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAATTCCATCAAGGGCTTGAATGATTATGTTGAAGGAAAGACC
TCTGATTTCTCAAATGTTGGCATTAAAGCAGTCGATGATCATACCCTTCAAATCACTTTGAACCAGGCAGAGCCTTTCTG
GAATTCTAAGTTGACTCTTGGAATCACGTTCCCTATCAACGAGAAATTCGTAGAATCTAAAGGGGATAAATTTGCCCAAG
CAAGTGACACTAGCTCTCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTCACTTCTAAATCATCTATCGAGATGAGC
AAGAATGAAAACTACTGGGATAAAGACAATGTTCACATCACAGACGTTAAGCTAGAATACTATGATGGTCAAGACCAAAG
TAAATTGGCCAACTCATTTGAGGACAACGCTCTTAGCCTTGCTAAATTGTTCCCAACTGGACCTGGATTTACTGACCAAG
CTAAGAAGTTTAAAGATGAAATCATCTACACTCCACAAGATGCCAGCACCTTCGTTATCGGTGTCAACATCGATCGTCAG
TCATACAAGTACACATCAAAAACAACTGATGAAGAAAAATCATCTACTAAGAAAGCTCTTTTGAACAAAGACTTCCGTCA
AGCGATCAGCTTTGCCTTTGACCGTGAAGCCTATGCTGCCCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGATCCGTA
ACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGTAAGAGCTTCGGTGAGATGGTTAAATCTGAGTTGGTGACTTAT
GGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAAAATGGTCTTTACAACGCAAAACAAGCCAAAGAAGAGTTTGC
GAAAGCTAAATCTGCACTTGAAGCAGATGGTGTAAAATTCCCAATCCACTTGGATATGCCAGTAGACCAAACGACTCAAT
CTAAGGTTCAACGTGCTCAATCCTTCAAACAATCAGTTGAAAGTACGCTTGGAAAAGAAAACGTCGTTGTCGACATCCAT
ATGGTATCCAAAGAAGACCTCTTGAACGTAACGCTCTTTGCTGCTAAGGCAGAAGACGAAGACTGGGATATCTCAGATAA
CGTTGGATGGAGCCCTGACTATCAAGACCCATCAACTTACCTTGATATCTTGAAAGCATCTTCTGGTGAAAACACTCGTA
CCTTCCTTGGATTTGACCCAAGCGAAAACAACGAGGCAGCTAAGAAAGTTGGTCTCTACGACTTTGAGAAGATGGTCGAT
GAAGCCGGAGCTGAAACACAAGACCTTAACAAACGTTATGAGAAATATGCTGCAGCTCAAGCTTGGTTGACGGATAGTGC
TTTGGTCATCCCAACAACATCTAAGACTGGTCGTCCATTCTTGACTCGTGTTGTACCATTCTCAGCACCATTTGGCTGGA
CCGGTGGTAAAGGGAAAGACAACGTTGTCTATAAAGGTATGGAACTTCAAGACAAGGCTGTAACAACCGAAGACTACAAC
AAAGCTCTTGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAAACCATGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.522

100

0.566
  amiA3 Streptococcus thermophilus LMG 18311

56.372

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.372

100

0.565

Multiple sequence alignment