Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LO000_RS06610 Genome accession   NZ_CP087354
Coordinates   1352411..1353118 (-) Length   235 a.a.
NCBI ID   WP_000203217.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB002     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347411..1358118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS06590 - 1348486..1349805 (+) 1320 WP_000517792.1 adenylosuccinate synthase -
  LO000_RS06595 - 1349928..1350245 (+) 318 WP_000776215.1 hypothetical protein -
  LO000_RS06600 - 1350362..1351141 (+) 780 WP_001034598.1 M48 family metallopeptidase -
  LO000_RS06605 - 1351201..1352250 (-) 1050 WP_001159802.1 NADP(H)-dependent aldo-keto reductase -
  LO000_RS06610 crp 1352411..1353118 (-) 708 WP_000203217.1 cAMP-activated global transcriptional regulator CRP Regulator
  LO000_RS06615 - 1353359..1353478 (+) 120 Protein_1280 hypothetical protein -
  LO000_RS06620 - 1353557..1353979 (+) 423 WP_001195082.1 OsmC family protein -
  LO000_RS06625 - 1354071..1354496 (+) 426 WP_001026230.1 GNAT family N-acetyltransferase -
  LO000_RS06630 - 1354493..1355299 (-) 807 WP_001237344.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26567.18 Da        Isoelectric Point: 4.6625

>NTDB_id=629111 LO000_RS06610 WP_000203217.1 1352411..1353118(-) (crp) [Acinetobacter baumannii strain DB002]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=629111 LO000_RS06610 WP_000203217.1 1352411..1353118(-) (crp) [Acinetobacter baumannii strain DB002]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACTCCAGTCACTGATGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.574

100

0.996
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4