Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO000_RS02995 Genome accession   NZ_CP087354
Coordinates   624781..625191 (+) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain DB002     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619781..630191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS02980 - 620770..623076 (+) 2307 WP_072292228.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO000_RS02985 - 623121..623894 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  LO000_RS02990 mazG 624006..624812 (+) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  LO000_RS02995 comEA 624781..625191 (+) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  LO000_RS03000 pcnB 625316..626779 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO000_RS03005 folK 626776..627258 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO000_RS03010 panB 627304..628113 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO000_RS03015 panC 628117..628965 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO000_RS03020 rapZ 628988..629839 (+) 852 WP_000821671.1 RNase adapter RapZ -
  LO000_RS03025 - 629836..630105 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=629106 LO000_RS02995 WP_001200131.1 624781..625191(+) (comEA) [Acinetobacter baumannii strain DB002]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=629106 LO000_RS02995 WP_001200131.1 624781..625191(+) (comEA) [Acinetobacter baumannii strain DB002]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404