Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO008_RS00365 Genome accession   NZ_CP087351
Coordinates   82192..82602 (+) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain DB003     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 77192..87602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO008_RS00350 - 78181..80487 (+) 2307 WP_072292228.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO008_RS00355 - 80532..81305 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  LO008_RS00360 mazG 81417..82223 (+) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  LO008_RS00365 comEA 82192..82602 (+) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  LO008_RS00370 pcnB 82727..84190 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO008_RS00375 folK 84187..84669 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO008_RS00380 panB 84715..85524 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO008_RS00385 panC 85528..86376 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO008_RS00390 rapZ 86399..87250 (+) 852 WP_000821671.1 RNase adapter RapZ -
  LO008_RS00395 - 87247..87516 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=629046 LO008_RS00365 WP_001200131.1 82192..82602(+) (comEA) [Acinetobacter baumannii strain DB003]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=629046 LO008_RS00365 WP_001200131.1 82192..82602(+) (comEA) [Acinetobacter baumannii strain DB003]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404