Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO006_RS15900 Genome accession   NZ_CP087348
Coordinates   3257571..3257981 (-) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   N9KEH5
Organism   Acinetobacter baumannii strain DB006     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3252571..3262981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS15870 - 3252657..3252926 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LO006_RS15875 rapZ 3252923..3253774 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LO006_RS15880 panC 3253797..3254645 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO006_RS15885 panB 3254649..3255458 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO006_RS15890 folK 3255504..3255986 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO006_RS15895 pcnB 3255983..3257446 (-) 1464 WP_001194207.1 polynucleotide adenylyltransferase PcnB -
  LO006_RS15900 comEA 3257571..3257981 (-) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  LO006_RS15905 mazG 3257950..3258756 (-) 807 WP_000359483.1 nucleoside triphosphate pyrophosphohydrolase -
  LO006_RS15910 - 3258868..3259641 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  LO006_RS15915 - 3259686..3261992 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=629027 LO006_RS15900 WP_002017231.1 3257571..3257981(-) (comEA) [Acinetobacter baumannii strain DB006]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=629027 LO006_RS15900 WP_002017231.1 3257571..3257981(-) (comEA) [Acinetobacter baumannii strain DB006]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KEH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412