Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LO006_RS03175 Genome accession   NZ_CP087348
Coordinates   653111..653494 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB006     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 651724..660126 653111..653494 within 0


Gene organization within MGE regions


Location: 651724..660126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO006_RS03170 - 651724..652716 (+) 993 WP_005028482.1 IS5-like element ISAba23 family transposase -
  LO006_RS03175 pilG 653111..653494 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LO006_RS03180 - 653518..653880 (+) 363 WP_000101096.1 PleD family two-component system response regulator -
  LO006_RS03185 - 653941..654477 (+) 537 WP_000729757.1 chemotaxis protein CheW -
  LO006_RS19600 - 654524..654715 (+) 192 Protein_608 hypothetical protein -
  LO006_RS03195 - 654767..655986 (+) 1220 WP_087486619.1 IS3-like element ISAba19 family transposase -
  LO006_RS03200 - 656022..657914 (+) 1893 Protein_610 methyl-accepting chemotaxis protein -
  LO006_RS03205 - 658061..658867 (+) 807 Protein_611 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=629015 LO006_RS03175 WP_000389061.1 653111..653494(+) (pilG) [Acinetobacter baumannii strain DB006]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=629015 LO006_RS03175 WP_000389061.1 653111..653494(+) (pilG) [Acinetobacter baumannii strain DB006]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37