Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   N597_RS02125 Genome accession   NC_022582
Coordinates   417035..418999 (-) Length   654 a.a.
NCBI ID   WP_023022536.1    Uniprot ID   A0A3A5QEE2
Organism   Streptococcus ilei     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 412035..423999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS02105 (N597_02180) - 413137..413400 (-) 264 WP_003006096.1 SemiSWEET family transporter -
  N597_RS02110 (N597_02185) - 413680..413937 (+) 258 WP_003006102.1 SemiSWEET family transporter -
  N597_RS02115 (N597_02190) - 414113..414880 (+) 768 WP_023022533.1 ABC transporter ATP-binding protein -
  N597_RS02120 (N597_02195) - 414873..416876 (+) 2004 WP_023022535.1 FtsX-like permease family protein -
  N597_RS02125 (N597_02200) amiA 417035..418999 (-) 1965 WP_023022536.1 peptide ABC transporter substrate-binding protein Regulator
  N597_RS02130 (N597_02205) - 419235..419564 (+) 330 WP_023022538.1 PadR family transcriptional regulator -
  N597_RS02135 (N597_02210) - 419561..420391 (+) 831 WP_023022540.1 hypothetical protein -
  N597_RS02140 (N597_02215) - 420491..420727 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  N597_RS02145 (N597_02220) - 420720..421418 (+) 699 WP_023022542.1 3-oxoacyl-ACP reductase -
  N597_RS02150 (N597_02225) - 421589..421879 (+) 291 WP_023022544.1 PepSY domain-containing protein -
  N597_RS02155 (N597_02235) - 422231..422650 (+) 420 WP_224781599.1 SMI1/KNR4 family protein -
  N597_RS02160 (N597_02240) - 422669..423007 (+) 339 WP_023022549.1 hypothetical protein -
  N597_RS02165 (N597_02245) - 423087..423902 (+) 816 WP_023022551.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72851.83 Da        Isoelectric Point: 4.6370

>NTDB_id=62900 N597_RS02125 WP_023022536.1 417035..418999(-) (amiA) [Streptococcus ilei]
MKKSKLAFLAGVTVASALFLASCGSSSKSSQTNTYSYVFSTDPDSLNYLLSNRSTTSDVTTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADNKSDALYLVQNSVAGLDDYVTGKNTDFSKVGV
KAIDDHTLQYTLAQPESFWNSKLTTSTMMPVNEKFLESAGKDFGSVKPSGILYNGPYYLKSFTSKSLMEFTKNENYYDKD
NVKIENIKLTYFDGSDQDYLARNFSDGNLTTARLFPTSSTFSTIEKKFKDNIVYSPQDATVYYVYFNVNRQNYGHTEKTT
DDQKNQTKTALQNKNFRQAINFALDRTSLSAQSNGKDGANKTLRTLLVPPTFVQVNNKDFGSVVEEKLAATGDDWKDVSL
ADAQDSMFNADKAKAQFAKAKEELQAQGVQFPIHIDYVVDQSSASIVQQADSMKDSIEKTLGKENVVVDVQKLSTEDADN
ATYFAQTPDQKDFDMDIGGWGPDFQDPSTYLDIFNPVDGSALAGMGINPATDQALIEKLGLNEYKQLLDNANAEQLDTNA
RYEKYAVAQAWLTDNAFALPVYSKGAVPSITKIKPFTKAFSLIGIKDGASYYKYMELQSDTVTTADYDKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=62900 N597_RS02125 WP_023022536.1 417035..418999(-) (amiA) [Streptococcus ilei]
ATGAAAAAATCTAAACTAGCTTTCCTAGCAGGTGTCACGGTTGCTTCAGCCCTGTTCCTTGCTTCATGTGGATCATCTTC
AAAATCTTCTCAGACAAACACCTACTCATACGTGTTTAGCACTGATCCAGATTCTTTGAACTACCTCCTTTCAAACCGTT
CTACAACAAGTGACGTTACAACTAACTTGGTTGATGGATTGTTTGAAAATGACCAATATGGTAATCTCGTCCCTGCACTA
GCGGAAGATTGGTCTGTTTCTAAAGACGGATTAACCTACACTTATAAACTCCGTAAAGATGCAAAATGGTATGACTCAGA
AGGAAACGAATATGCAGATGTCACTGCACAAGACTTCGTCACTTCTCTGAAATATGTAGCAGACAACAAGTCAGATGCCC
TCTACTTGGTTCAAAACTCAGTAGCCGGCCTGGATGACTATGTCACTGGTAAAAATACAGACTTCTCTAAAGTTGGTGTC
AAAGCCATTGATGACCATACCCTCCAATACACCTTGGCTCAACCGGAGTCCTTCTGGAATTCTAAATTGACAACTTCAAC
CATGATGCCCGTCAATGAAAAATTCCTTGAGTCTGCAGGAAAAGACTTCGGTAGCGTCAAACCTTCTGGAATCCTCTACA
ACGGTCCTTACTACTTGAAATCCTTCACTTCAAAATCTTTGATGGAGTTCACCAAGAACGAGAACTACTACGACAAAGAC
AATGTGAAGATTGAAAATATCAAGTTGACCTACTTCGATGGTTCTGACCAAGACTACCTAGCTCGTAACTTCTCTGATGG
GAACTTGACCACAGCGCGTCTCTTCCCAACGAGCTCAACCTTCAGTACCATTGAGAAAAAATTCAAAGACAATATCGTTT
ATTCACCGCAAGATGCGACTGTCTACTATGTCTACTTCAACGTAAACCGTCAAAACTACGGTCATACTGAGAAAACAACA
GACGACCAGAAGAACCAAACAAAAACAGCTCTTCAAAACAAAAACTTCCGTCAAGCCATCAACTTTGCCCTTGATCGTAC
TTCTCTAAGTGCCCAATCAAACGGAAAAGATGGAGCTAACAAAACCCTTCGTACGCTTCTTGTGCCTCCAACATTTGTGC
AAGTAAACAACAAAGACTTCGGTAGCGTTGTCGAAGAAAAACTTGCTGCAACAGGAGATGATTGGAAGGATGTCAGCCTA
GCTGATGCGCAAGATAGCATGTTCAATGCGGACAAGGCCAAAGCACAATTTGCCAAAGCCAAAGAAGAGCTCCAAGCGCA
AGGTGTTCAATTCCCAATCCACATCGACTATGTAGTTGACCAATCTTCTGCTAGCATTGTGCAACAAGCTGATTCAATGA
AAGACTCCATCGAAAAAACATTAGGAAAAGAAAATGTTGTCGTGGATGTTCAGAAATTGTCTACGGAAGATGCGGACAAT
GCAACCTACTTCGCCCAAACACCAGATCAAAAAGACTTTGATATGGATATCGGTGGTTGGGGACCTGACTTCCAAGACCC
ATCAACTTACTTGGATATCTTCAATCCAGTAGATGGTTCAGCCTTAGCAGGTATGGGGATCAATCCAGCAACTGACCAAG
CCCTTATCGAAAAACTTGGTTTGAACGAGTATAAACAACTATTGGATAATGCCAATGCAGAACAATTGGATACCAATGCT
CGTTACGAAAAATATGCTGTTGCTCAAGCTTGGTTGACAGACAATGCCTTTGCCCTTCCTGTCTACTCTAAGGGTGCTGT
CCCTTCTATCACGAAGATCAAACCATTTACAAAAGCCTTCTCCTTGATTGGTATCAAAGACGGGGCTAGCTACTACAAGT
ACATGGAATTACAAAGTGATACAGTCACAACGGCTGACTACGACAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A5QEE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.255

100

0.546
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.541

Multiple sequence alignment