Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   N4269_RS00935 Genome accession   NZ_CP104356
Coordinates   192921..194999 (-) Length   692 a.a.
NCBI ID   WP_114812288.1    Uniprot ID   -
Organism   Vibrio cholerae strain PNUSAV001141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 187921..199999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4269_RS00920 (N4269_00920) ompR 189044..189766 (+) 723 WP_000230025.1 two-component system response regulator OmpR -
  N4269_RS00925 (N4269_00925) envZ 189835..191151 (+) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  N4269_RS00930 (N4269_00930) - 191176..192576 (-) 1401 WP_134986637.1 uracil-xanthine permease family protein -
  N4269_RS00935 (N4269_00935) recG 192921..194999 (-) 2079 WP_114812288.1 ATP-dependent DNA helicase RecG Machinery gene
  N4269_RS00940 (N4269_00940) spoT 195117..197234 (-) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  N4269_RS00945 (N4269_00945) rpoZ 197266..197538 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  N4269_RS00950 (N4269_00950) gmk 197646..198269 (-) 624 WP_000515793.1 guanylate kinase -
  N4269_RS00955 (N4269_00955) - 198637..199308 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76977.19 Da        Isoelectric Point: 7.5643

>NTDB_id=628945 N4269_RS00935 WP_114812288.1 192921..194999(-) (recG) [Vibrio cholerae strain PNUSAV001141]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTEQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=628945 N4269_RS00935 WP_114812288.1 192921..194999(-) (recG) [Vibrio cholerae strain PNUSAV001141]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTACGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACACTGACACTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAGATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCAAACCTGACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTGCGTAATTTGACTGAACAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAAATCATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTAGCGCAGAATCTCTCTATGCTCGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTACCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTGGCACAATTGCCCTTTTC
TCCGACTAAGGCGCAGCAACGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCACATCCAATGATGCGCTTAGTCC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCCCTCGCAGCAGTGCGGGCGATTGAGCATGGCTATCAAGTAGCC
TTGATGGCTCCTACCGAGCTACTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGTAAGCTTAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTTGGCACCCATGCTCTGTTTCAAGAGCAAGTGTCGTTTGACCATCTAGCCTTGGTGATTATTGATGAGCAACATCGC
TTCGGGGTGCATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACATTAGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTTGAGCGTATTCGCCACGCTTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCACAAGCGGCCGCAGAAACGGC
AGAAGAACTGCAACGTAAACTTCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAATAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTACCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAGCGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGCCGAGTCGGGCGTGG
CACAGTTGCCAGCCACTGTGTGCTTCTATTTCATGCGCCATTGTCAAAAACCGCTCAAAAACGCTTAGGCGTTCTGCGTG
AAAGCAATGATGGCTTCGTCATCGCGCAGCGCGACTTGGAAATTCGTGGCCCCGGAGAGCTACTGGGTACCAAACAAACC
GGCTTGGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAACGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-432)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

RecG wedge domain (RecG_wedge)

(15-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.552

96.821

0.383
  recG/mmsA Streptococcus pneumoniae R36A

39.552

96.821

0.383
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37