Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LO011_RS16675 Genome accession   NZ_CP087340
Coordinates   3431203..3431685 (-) Length   160 a.a.
NCBI ID   WP_001046419.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3426203..3436685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS16640 - 3426309..3427343 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  LO011_RS16645 - 3427458..3428399 (+) 942 WP_119310154.1 triacylglycerol lipase -
  LO011_RS16650 rplS 3428453..3428821 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO011_RS16655 trmD 3429029..3429769 (-) 741 WP_005109350.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO011_RS16660 rimM 3429815..3430363 (-) 549 WP_005134605.1 ribosome maturation factor RimM -
  LO011_RS16665 rpsP 3430383..3430634 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO011_RS16670 pilE 3430781..3431206 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  LO011_RS16675 pilY2 3431203..3431685 (-) 483 WP_001046419.1 type IV pilin protein Machinery gene
  LO011_RS16680 pilY1 3431698..3435552 (-) 3855 WP_025470147.1 PilC/PilY family type IV pilus protein Machinery gene
  LO011_RS16685 pilX 3435564..3436382 (-) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17547.78 Da        Isoelectric Point: 8.4834

>NTDB_id=628939 LO011_RS16675 WP_001046419.1 3431203..3431685(-) (pilY2) [Acinetobacter baumannii strain DB008]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=628939 LO011_RS16675 WP_001046419.1 3431203..3431685(-) (pilY2) [Acinetobacter baumannii strain DB008]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCAAATGGGCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

39.535

100

0.425