Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LO011_RS16685 Genome accession   NZ_CP087340
Coordinates   3435564..3436382 (-) Length   272 a.a.
NCBI ID   WP_000149371.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3430564..3441382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS16670 pilE 3430781..3431206 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  LO011_RS16675 pilY2 3431203..3431685 (-) 483 WP_001046419.1 type IV pilin protein Machinery gene
  LO011_RS16680 pilY1 3431698..3435552 (-) 3855 WP_025470147.1 PilC/PilY family type IV pilus protein Machinery gene
  LO011_RS16685 pilX 3435564..3436382 (-) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO011_RS16690 pilW 3436379..3437380 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO011_RS16695 pilV 3437381..3437941 (-) 561 WP_153310066.1 type IV pilus modification protein PilV Machinery gene
  LO011_RS16700 fimU 3437935..3438408 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO011_RS16705 ispH 3438578..3439528 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO011_RS16710 gmk 3439651..3440280 (+) 630 WP_000015937.1 guanylate kinase -
  LO011_RS16715 rpoZ 3440353..3440631 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO011_RS16720 - 3440670..3440800 (+) 131 Protein_3258 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28802.63 Da        Isoelectric Point: 5.6905

>NTDB_id=628941 LO011_RS16685 WP_000149371.1 3435564..3436382(-) (pilX) [Acinetobacter baumannii strain DB008]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLEALQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=628941 LO011_RS16685 WP_000149371.1 3435564..3436382(-) (pilX) [Acinetobacter baumannii strain DB008]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTAGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAGCTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993