Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LO011_RS15050 Genome accession   NZ_CP087340
Coordinates   3107033..3107416 (-) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB008     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3102033..3112416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS15020 - 3102275..3102418 (+) 144 WP_001984826.1 entericidin A/B family lipoprotein -
  LO011_RS15025 dapE 3102544..3103677 (+) 1134 WP_001016580.1 succinyl-diaminopimelate desuccinylase -
  LO011_RS15030 - 3103815..3104012 (-) 198 Protein_2937 alpha/beta hydrolase -
  LO011_RS15035 - 3103979..3106003 (-) 2025 WP_017725536.1 methyl-accepting chemotaxis protein -
  LO011_RS15040 - 3106050..3106586 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  LO011_RS15045 - 3106647..3107009 (-) 363 WP_000101096.1 PleD family two-component system response regulator -
  LO011_RS15050 pilG 3107033..3107416 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  LO011_RS15055 - 3107700..3108338 (+) 639 WP_005134798.1 hypothetical protein -
  LO011_RS15060 - 3108398..3109516 (+) 1119 WP_258579401.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=628934 LO011_RS15050 WP_000389061.1 3107033..3107416(-) (pilG) [Acinetobacter baumannii strain DB008]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=628934 LO011_RS15050 WP_000389061.1 3107033..3107416(-) (pilG) [Acinetobacter baumannii strain DB008]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTTTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37