Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO010_RS16360 Genome accession   NZ_CP087335
Coordinates   3385333..3385743 (-) Length   136 a.a.
NCBI ID   WP_025466948.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3380333..3390743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS16330 - 3380419..3380688 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LO010_RS16335 rapZ 3380685..3381536 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LO010_RS16340 panC 3381559..3382407 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO010_RS16345 panB 3382411..3383220 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO010_RS16350 folK 3383266..3383748 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO010_RS16355 pcnB 3383745..3385208 (-) 1464 WP_001194203.1 polynucleotide adenylyltransferase PcnB -
  LO010_RS16360 comEA 3385333..3385743 (-) 411 WP_025466948.1 ComEA family DNA-binding protein Machinery gene
  LO010_RS16365 mazG 3385712..3386518 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  LO010_RS16370 - 3386630..3387403 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  LO010_RS16375 - 3387448..3389754 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15733.02 Da        Isoelectric Point: 10.3828

>NTDB_id=628889 LO010_RS16360 WP_025466948.1 3385333..3385743(-) (comEA) [Acinetobacter baumannii strain DB053]
MQYSMRFWKNKYFILIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDFTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628889 LO010_RS16360 WP_025466948.1 3385333..3385743(-) (comEA) [Acinetobacter baumannii strain DB053]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTTTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

43.511

96.324

0.419