Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LO010_RS01805 Genome accession   NZ_CP087335
Coordinates   387076..387558 (+) Length   160 a.a.
NCBI ID   WP_032001104.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382076..392558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS01795 - 382676..383200 (+) 525 Protein_345 pilus assembly protein -
  LO010_RS01800 pilY1 383212..387063 (+) 3852 WP_258580363.1 PilC/PilY family type IV pilus protein Machinery gene
  LO010_RS01805 pilY2 387076..387558 (+) 483 WP_032001104.1 type IV pilin protein Machinery gene
  LO010_RS01810 pilE 387555..387980 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LO010_RS01815 rpsP 388127..388378 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO010_RS01820 rimM 388398..388946 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO010_RS01825 trmD 388992..389732 (+) 741 WP_005109350.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO010_RS01830 rplS 389940..390308 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO010_RS01835 - 390360..391301 (-) 942 WP_086352904.1 triacylglycerol lipase -
  LO010_RS01840 - 391416..392447 (-) 1032 WP_032001101.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17546.86 Da        Isoelectric Point: 8.4817

>NTDB_id=628870 LO010_RS01805 WP_032001104.1 387076..387558(+) (pilY2) [Acinetobacter baumannii strain DB053]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTMTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=628870 LO010_RS01805 WP_032001104.1 387076..387558(+) (pilY2) [Acinetobacter baumannii strain DB053]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGATGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.698

100

0.438