Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   LOZ98_RS16345 Genome accession   NZ_CP087328
Coordinates   3322393..3323193 (-) Length   266 a.a.
NCBI ID   WP_188198396.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC074     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3317393..3328193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS16325 - 3318458..3319156 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  LOZ98_RS16330 hisS 3319185..3320477 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  LOZ98_RS16335 ispG 3320474..3321589 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  LOZ98_RS16340 - 3321611..3322402 (-) 792 WP_000405161.1 RodZ domain-containing protein -
  LOZ98_RS16345 pilF 3322393..3323193 (-) 801 WP_188198396.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  LOZ98_RS16350 rlmN 3323209..3324441 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LOZ98_RS16355 ndk 3324564..3324995 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  LOZ98_RS16360 iscX 3325109..3325309 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  LOZ98_RS16365 - 3325409..3325960 (-) 552 WP_000669564.1 phosphatase PAP2 family protein -
  LOZ98_RS16370 - 3325985..3327283 (-) 1299 WP_000348499.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30066.37 Da        Isoelectric Point: 9.2307

>NTDB_id=628794 LOZ98_RS16345 WP_188198396.1 3322393..3323193(-) (pilF) [Acinetobacter baumannii strain OC074]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKSNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQIERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=628794 LOZ98_RS16345 WP_188198396.1 3322393..3323193(-) (pilF) [Acinetobacter baumannii strain OC074]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGCCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAATCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATAGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(88-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.248

100

0.992
  pilF Acinetobacter baylyi ADP1

73.462

97.744

0.718