Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LOZ98_RS15675 Genome accession   NZ_CP087328
Coordinates   3169851..3170261 (-) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   A0AAQ0VHX0
Organism   Acinetobacter baumannii strain OC074     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3164851..3175261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS15645 - 3164937..3165206 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LOZ98_RS15650 rapZ 3165203..3166054 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LOZ98_RS15655 panC 3166077..3166925 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LOZ98_RS15660 panB 3166929..3167738 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LOZ98_RS15665 folK 3167784..3168266 (-) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LOZ98_RS15670 pcnB 3168263..3169726 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LOZ98_RS15675 comEA 3169851..3170261 (-) 411 WP_001200146.1 helix-hairpin-helix domain-containing protein Machinery gene
  LOZ98_RS15680 mazG 3170230..3171036 (-) 807 WP_004738180.1 nucleoside triphosphate pyrophosphohydrolase -
  LOZ98_RS15685 - 3171148..3171921 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  LOZ98_RS15690 - 3171966..3174272 (-) 2307 WP_004738178.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=628793 LOZ98_RS15675 WP_001200146.1 3169851..3170261(-) (comEA) [Acinetobacter baumannii strain OC074]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628793 LOZ98_RS15675 WP_001200146.1 3169851..3170261(-) (comEA) [Acinetobacter baumannii strain OC074]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412