Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO013_RS15090 Genome accession   NZ_CP087325
Coordinates   3078116..3078526 (-) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   A0AAQ0VHX0
Organism   Acinetobacter baumannii strain OC073     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3073116..3083526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS15060 - 3073202..3073471 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LO013_RS15065 rapZ 3073468..3074319 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LO013_RS15070 panC 3074342..3075190 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO013_RS15075 panB 3075194..3076003 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO013_RS15080 folK 3076049..3076531 (-) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO013_RS15085 pcnB 3076528..3077991 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO013_RS15090 comEA 3078116..3078526 (-) 411 WP_001200146.1 helix-hairpin-helix domain-containing protein Machinery gene
  LO013_RS15095 mazG 3078495..3079301 (-) 807 WP_004738180.1 nucleoside triphosphate pyrophosphohydrolase -
  LO013_RS15100 - 3079413..3080186 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  LO013_RS15105 - 3080231..3082537 (-) 2307 WP_004738178.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=628747 LO013_RS15090 WP_001200146.1 3078116..3078526(-) (comEA) [Acinetobacter baumannii strain OC073]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628747 LO013_RS15090 WP_001200146.1 3078116..3078526(-) (comEA) [Acinetobacter baumannii strain OC073]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412