Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO012_RS03900 Genome accession   NZ_CP087317
Coordinates   803418..803828 (+) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain OC064     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798418..808828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO012_RS03885 - 799407..801713 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO012_RS03890 - 801758..802531 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  LO012_RS03895 mazG 802643..803449 (+) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  LO012_RS03900 comEA 803418..803828 (+) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  LO012_RS03905 pcnB 803953..805416 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO012_RS03910 folK 805413..805895 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO012_RS03915 panB 805941..806750 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO012_RS03920 panC 806754..807602 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO012_RS03925 rapZ 807625..808476 (+) 852 WP_000821671.1 RNase adapter RapZ -
  LO012_RS03930 - 808473..808742 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=628649 LO012_RS03900 WP_001200131.1 803418..803828(+) (comEA) [Acinetobacter baumannii strain OC064]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628649 LO012_RS03900 WP_001200131.1 803418..803828(+) (comEA) [Acinetobacter baumannii strain OC064]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404