Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LO012_RS01935 Genome accession   NZ_CP087317
Coordinates   381949..382431 (+) Length   160 a.a.
NCBI ID   WP_001046489.1    Uniprot ID   A0A0J0ZLV7
Organism   Acinetobacter baumannii strain OC064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376949..387431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO012_RS01925 pilX 377254..378072 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO012_RS01930 pilY1 378084..381938 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  LO012_RS01935 pilY2 381949..382431 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  LO012_RS01940 pilE 382428..382853 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene
  LO012_RS01945 rpsP 383000..383251 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO012_RS01950 rimM 383271..383819 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO012_RS01955 trmD 383865..384605 (+) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO012_RS01960 rplS 384813..385181 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO012_RS01965 - 385233..386174 (-) 942 WP_085916958.1 triacylglycerol lipase -
  LO012_RS01970 - 386289..387320 (-) 1032 WP_001189459.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17657.94 Da        Isoelectric Point: 8.4737

>NTDB_id=628635 LO012_RS01935 WP_001046489.1 381949..382431(+) (pilY2) [Acinetobacter baumannii strain OC064]
MNKYYILRFNQGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=628635 LO012_RS01935 WP_001046489.1 381949..382431(+) (pilY2) [Acinetobacter baumannii strain OC064]
ATGAATAAGTACTACATTTTACGGTTCAATCAGGGTTTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZLV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.25

100

0.963
  comE Acinetobacter baylyi ADP1

41.86

100

0.45