Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LO007_RS16505 Genome accession   NZ_CP087312
Coordinates   3485499..3486317 (-) Length   272 a.a.
NCBI ID   WP_188137324.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480499..3491317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS16490 pilE 3480716..3481141 (-) 426 WP_031999633.1 type IV pilin protein Machinery gene
  LO007_RS16495 pilY2 3481138..3481620 (-) 483 WP_001046424.1 type IV pilin protein Machinery gene
  LO007_RS16500 pilY1 3481633..3485487 (-) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  LO007_RS16505 pilX 3485499..3486317 (-) 819 WP_188137324.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO007_RS16510 pilW 3486314..3487315 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO007_RS16515 pilV 3487316..3487876 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO007_RS16520 fimU 3487870..3488343 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO007_RS16525 ispH 3488513..3489463 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO007_RS16530 gmk 3489586..3490215 (+) 630 WP_000015937.1 guanylate kinase -
  LO007_RS16535 rpoZ 3490288..3490566 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO007_RS16540 - 3490605..3490735 (+) 131 Protein_3217 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28804.60 Da        Isoelectric Point: 5.2368

>NTDB_id=628611 LO007_RS16505 WP_188137324.1 3485499..3486317(-) (pilX) [Acinetobacter baumannii strain OC059]
MTHLNYKNIKGQSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=628611 LO007_RS16505 WP_188137324.1 3485499..3486317(-) (pilX) [Acinetobacter baumannii strain OC059]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCAATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989