Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO007_RS16520 Genome accession   NZ_CP087312
Coordinates   3487870..3488343 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3482870..3493343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS16505 pilX 3485499..3486317 (-) 819 WP_188137324.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO007_RS16510 pilW 3486314..3487315 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO007_RS16515 pilV 3487316..3487876 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO007_RS16520 fimU 3487870..3488343 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO007_RS16525 ispH 3488513..3489463 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO007_RS16530 gmk 3489586..3490215 (+) 630 WP_000015937.1 guanylate kinase -
  LO007_RS16535 rpoZ 3490288..3490566 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO007_RS16540 - 3490605..3490735 (+) 131 Protein_3217 hypothetical protein -
  LO007_RS16545 - 3490775..3492880 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=628614 LO007_RS16520 WP_001214065.1 3487870..3488343(-) (fimU) [Acinetobacter baumannii strain OC059]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628614 LO007_RS16520 WP_001214065.1 3487870..3488343(-) (fimU) [Acinetobacter baumannii strain OC059]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1