Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO007_RS03010 Genome accession   NZ_CP087312
Coordinates   641509..641919 (+) Length   136 a.a.
NCBI ID   WP_031999766.1    Uniprot ID   A0A7U5A843
Organism   Acinetobacter baumannii strain OC059     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 636509..646919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS02995 - 637498..639804 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO007_RS03000 - 639849..640622 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  LO007_RS03005 mazG 640734..641540 (+) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  LO007_RS03010 comEA 641509..641919 (+) 411 WP_031999766.1 ComEA family DNA-binding protein Machinery gene
  LO007_RS03015 pcnB 642044..643507 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO007_RS03020 folK 643504..643986 (+) 483 WP_000219212.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO007_RS03025 panB 644032..644841 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO007_RS03030 panC 644845..645693 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO007_RS03035 rapZ 645716..646567 (+) 852 WP_000821671.1 RNase adapter RapZ -
  LO007_RS03040 - 646564..646833 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15686.95 Da        Isoelectric Point: 10.3828

>NTDB_id=628591 LO007_RS03010 WP_031999766.1 641509..641919(+) (comEA) [Acinetobacter baumannii strain OC059]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628591 LO007_RS03010 WP_031999766.1 641509..641919(+) (comEA) [Acinetobacter baumannii strain OC059]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAACAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U5A843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404