Detailed information NTG0628579

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LO007_RS01225
• Genome accession: NZ_CP087312
• Coordinates: 253335..254756 (-)
• Length: 473 a.a.
• NCBI ID: WP_031999567.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain OC059
• Function: regulation of type IV pilus assembly (predicted from homology) Competence regulation

Genomic Context

Location: 248335..259756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LO007_RS01210	lptG	249388..250458 (+)	1071	WP_000881092.1	LPS export ABC transporter permease LptG	-
LO007_RS01215	gpmI	250584..252131 (+)	1548	WP_031999566.1	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	-
LO007_RS01220	-	252147..253331 (+)	1185	WP_000939107.1	S41 family peptidase	-
LO007_RS01225	pilR	253335..254756 (-)	1422	WP_031999567.1	sigma-54 dependent transcriptional regulator	Regulator
LO007_RS01230	pilS	254781..256349 (-)	1569	WP_005129877.1	PAS domain-containing sensor histidine kinase	Regulator
LO007_RS01235	-	256360..256995 (-)	636	WP_038405422.1	response regulator	-
LO007_RS01240	pbpG	257208..258254 (+)	1047	WP_153560314.1	D-alanyl-D-alanine endopeptidase PBP7/8	-
LO007_RS01245	thrC	258361..259500 (-)	1140	WP_000063593.1	threonine synthase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 52935.18 Da
• Isoelectric Point: 6.7380

>NTDB_id=628579 LO007_RS01225 WP_031999567.1 253335..254756(-) (pilR) [Acinetobacter baumannii strain OC059]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEPDFAESALENKLLIGCSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMDWETPPKQLTEAAKTYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide

• Length: 1422 bp

>NTDB_id=628579 LO007_RS01225 WP_031999567.1 253335..254756(-) (pilR) [Acinetobacter baumannii strain OC059]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTATTGATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGACTTAGTCAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCCTGATTTTGCCGAGAGTG
CTTTAGAAAACAAATTATTAATCGGTTGTTCTCTGCCTATTCAACAATTACGCATCGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCAGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTAATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTAGCCAATCACTTTATTCAGAAAATTTGTATGGATTGGGAAACGCCACCTAAACAATTAACAGAAGCGGCCAAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGTCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-117)

• Bacterial regulatory protein, Fis family (HTH_8) (423-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Acinetobacter baumannii strain A118	98.097	100	0.981
pilR	Pseudomonas aeruginosa PAK	51.198	97.04	0.497