Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LO014_RS16890 Genome accession   NZ_CP087300
Coordinates   3370141..3370614 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain OC061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365141..3375614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS16875 pilX 3367770..3368588 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO014_RS16880 pilW 3368585..3369586 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO014_RS16885 pilV 3369587..3370147 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO014_RS16890 fimU 3370141..3370614 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO014_RS16895 ispH 3370784..3371734 (-) 951 WP_258583672.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO014_RS16900 gmk 3371857..3372486 (+) 630 WP_000015937.1 guanylate kinase -
  LO014_RS16905 rpoZ 3372559..3372837 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO014_RS16910 - 3372876..3373006 (+) 131 Protein_3298 hypothetical protein -
  LO014_RS16915 - 3373046..3375151 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=628471 LO014_RS16890 WP_001214065.1 3370141..3370614(-) (fimU) [Acinetobacter baumannii strain OC061]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=628471 LO014_RS16890 WP_001214065.1 3370141..3370614(-) (fimU) [Acinetobacter baumannii strain OC061]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1