Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO014_RS02960 Genome accession   NZ_CP087300
Coordinates   614431..614841 (+) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   N9KEH5
Organism   Acinetobacter baumannii strain OC061     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609431..619841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS02945 - 610420..612726 (+) 2307 WP_000259108.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO014_RS02950 - 612771..613544 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  LO014_RS02955 mazG 613656..614462 (+) 807 WP_000359497.1 nucleoside triphosphate pyrophosphohydrolase -
  LO014_RS02960 comEA 614431..614841 (+) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  LO014_RS02965 pcnB 614966..616429 (+) 1464 WP_258584046.1 polynucleotide adenylyltransferase PcnB -
  LO014_RS02970 folK 616426..616908 (+) 483 WP_000219216.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO014_RS02975 panB 616954..617763 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO014_RS02980 panC 617767..618615 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO014_RS02985 rapZ 618638..619489 (+) 852 WP_000821671.1 RNase adapter RapZ -
  LO014_RS02990 - 619486..619755 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=628447 LO014_RS02960 WP_002017231.1 614431..614841(+) (comEA) [Acinetobacter baumannii strain OC061]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628447 LO014_RS02960 WP_002017231.1 614431..614841(+) (comEA) [Acinetobacter baumannii strain OC061]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KEH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412