Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   N4T40_RS03080 Genome accession   NZ_CP104335
Coordinates   570185..570547 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 565185..575547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS03070 (N4T40_03070) - 567463..569541 (-) 2079 WP_000505936.1 methyl-accepting chemotaxis protein -
  N4T40_RS03075 (N4T40_03075) - 569588..570124 (-) 537 WP_000729759.1 chemotaxis protein CheW -
  N4T40_RS03080 (N4T40_03080) pilH 570185..570547 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  N4T40_RS03085 (N4T40_03085) pilG 570571..570954 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  N4T40_RS03090 (N4T40_03090) - 571238..571876 (+) 639 WP_002027721.1 hypothetical protein -
  N4T40_RS03095 (N4T40_03095) - 571936..573054 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=628420 N4T40_RS03080 WP_000101096.1 570185..570547(-) (pilH) [Acinetobacter baumannii strain 2021CK-01408]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=628420 N4T40_RS03080 WP_000101096.1 570185..570547(-) (pilH) [Acinetobacter baumannii strain 2021CK-01408]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
TGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392