Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO009_RS03075 Genome accession   NZ_CP087298
Coordinates   657075..657485 (+) Length   136 a.a.
NCBI ID   WP_012297365.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 652075..662485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS03060 - 653064..655370 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LO009_RS03065 - 655415..656188 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  LO009_RS03070 mazG 656300..657106 (+) 807 WP_138148813.1 nucleoside triphosphate pyrophosphohydrolase -
  LO009_RS03075 comEA 657075..657485 (+) 411 WP_012297365.1 ComEA family DNA-binding protein Machinery gene
  LO009_RS03080 pcnB 657610..659073 (+) 1464 WP_001194203.1 polynucleotide adenylyltransferase PcnB -
  LO009_RS03085 folK 659070..659552 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO009_RS03090 panB 659598..660407 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO009_RS03095 panC 660411..661259 (+) 849 WP_138148815.1 pantoate--beta-alanine ligase -
  LO009_RS03100 rapZ 661282..662133 (+) 852 WP_000821671.1 RNase adapter RapZ -
  LO009_RS03105 - 662130..662399 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15702.95 Da        Isoelectric Point: 10.3828

>NTDB_id=628406 LO009_RS03075 WP_012297365.1 657075..657485(+) (comEA) [Acinetobacter baumannii strain OC070]
MQYSMRFWKNKYFLLIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNISKSSHSNSSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628406 LO009_RS03075 WP_012297365.1 657075..657485(+) (comEA) [Acinetobacter baumannii strain OC070]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATTTCTA
AGTCTTCTCATTCTAATAGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGGCCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baylyi ADP1

45.038

96.324

0.434