Detailed information NTG0628130

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY68_RS27425
• Genome accession: NZ_CP087205
• Coordinates: 6120421..6121761 (+)
• Length: 446 a.a.
• NCBI ID: WP_265040971.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-053
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6115421..6126761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY68_RS27400 (LOY68_27375)	pgeF	6115622..6116347 (-)	726	WP_265040966.1	peptidoglycan editing factor PgeF	-
LOY68_RS27405 (LOY68_27380)	rluD	6116344..6117306 (-)	963	WP_054051336.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY68_RS27410 (LOY68_27385)	-	6117458..6118480 (+)	1023	WP_163911753.1	outer membrane protein assembly factor BamD	-
LOY68_RS27415 (LOY68_27390)	-	6118606..6118839 (+)	234	WP_265040969.1	PP0621 family protein	-
LOY68_RS27420 (LOY68_27395)	pilS	6118829..6120418 (+)	1590	WP_265045838.1	sensor histidine kinase	Regulator
LOY68_RS27425 (LOY68_27400)	pilR	6120421..6121761 (+)	1341	WP_265040971.1	sigma-54-dependent transcriptional regulator	Regulator
LOY68_RS27430 (LOY68_27405)	thiO	6121847..6122947 (-)	1101	WP_265040973.1	glycine oxidase ThiO	-
LOY68_RS27435 (LOY68_27410)	-	6123004..6123399 (-)	396	WP_054616661.1	type IV pilin protein	-
LOY68_RS27440 (LOY68_27415)	-	6123414..6126521 (-)	3108	WP_265040975.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49697.12 Da
• Isoelectric Point: 7.1881

>NTDB_id=628130 LOY68_RS27425 WP_265040971.1 6120421..6121761(+) (pilR) [Pseudomonas sp. B21-053]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLGRETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGESLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAGRPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDNPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRAVGGQQETVVDVRILCATHKDLDAEVSAERFRQDLYYRLNVIELRVPPLRERRDDIETLANH
VLKRLAAGTGHPAAKLHPQALEALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCAAEAGVPDLKRIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=628130 LOY68_RS27425 WP_265040971.1 6120421..6121761(+) (pilR) [Pseudomonas sp. B21-053]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTTCAGTGCCCGTAACCTCGGCGAAGCCCAGGCGCTGCTGGGCCGGGAAACATTCGATCTGTGCCTGA
CCGACATGCGTCTGCCCGATGGTACGGGCCTGGAGCTGGTGCAACACATCCAGCAACGTTATCCCCAAGTGCCGGTGGCG
ATGATCACCGCTTACGGTAGCCTCGAAACCGCGATCAACGCCCTCAAGGCCGGTGCCTTTGACTTCCTGACCAAACCGGT
GGACCTCACCCGACTGCGGGAACTGGTCACCAGCGCCCTGCGCCTGCCCGCTCCGGGTGGCGCCAGCACCGCCATCGATC
GTCGGTTGCTGGGCGAATCATTGCCGATGCGCAACCTGCGTAAACAAATCGACAAACTGGCCCGCAGCCAGGCCCCGGTG
TACATCAGCGGCGAATCCGGTAGCGGCAAGGAGTTGGTCGCGCGCCTGATCCACGAACAAGGCCCACGGGCCGGCCGGCC
CTTTATCCCGGTCAACTGCGGGGCAATCCCGTCCGAATTGATGGAAAGTGAATTCTTTGGCCACCGCAAAGGCAGCTTCA
GTGGTGCCATTGAAGACAATCCCGGACTATTCCAGGCGGCGCATGGCGGCACTCTGTTCCTCGACGAAGTGGCGGATTTG
CCGCTGGCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAGAAAGCCGTACGCGCCGTCGGCGGGCAGCAGGAAACCGT
GGTCGATGTACGCATCCTTTGCGCCACTCACAAAGACCTCGATGCCGAAGTCAGCGCCGAACGTTTTCGCCAGGATTTGT
ACTACCGCCTGAACGTGATCGAGTTGCGCGTCCCGCCCTTGCGCGAACGCCGGGACGACATCGAGACACTGGCCAATCAT
GTGCTCAAGCGCCTGGCCGCCGGCACCGGCCATCCCGCAGCCAAATTGCATCCGCAAGCCCTTGAAGCACTGAAAAGCTA
CCGCTTTCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGCGCTCACACCTTGTGCGAGAACAAACAGATCGAAG
CCGGGGACTTGCGCCTGGCCGAAGGCAACTGCGCCGCAGAAGCGGGTGTGCCAGACCTGAAGCGGATCGACAATCTGGAA
GATTATCTGGAGAACGTCGAACGCAAACTGATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGTACAGCGGCGGCGCA
ACGGTTGAATTTGTCGTTTCGGTCGATGCGCTACAGGCTGAAGAAATTAGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.587	99.327	0.8
pilR	Acinetobacter baumannii strain A118	49.783	100	0.513