Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY68_RS27420 Genome accession   NZ_CP087205
Coordinates   6118829..6120418 (+) Length   529 a.a.
NCBI ID   WP_265045838.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-053     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6113829..6125418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY68_RS27400 (LOY68_27375) pgeF 6115622..6116347 (-) 726 WP_265040966.1 peptidoglycan editing factor PgeF -
  LOY68_RS27405 (LOY68_27380) rluD 6116344..6117306 (-) 963 WP_054051336.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY68_RS27410 (LOY68_27385) - 6117458..6118480 (+) 1023 WP_163911753.1 outer membrane protein assembly factor BamD -
  LOY68_RS27415 (LOY68_27390) - 6118606..6118839 (+) 234 WP_265040969.1 PP0621 family protein -
  LOY68_RS27420 (LOY68_27395) pilS 6118829..6120418 (+) 1590 WP_265045838.1 sensor histidine kinase Regulator
  LOY68_RS27425 (LOY68_27400) pilR 6120421..6121761 (+) 1341 WP_265040971.1 sigma-54-dependent transcriptional regulator Regulator
  LOY68_RS27430 (LOY68_27405) thiO 6121847..6122947 (-) 1101 WP_265040973.1 glycine oxidase ThiO -
  LOY68_RS27435 (LOY68_27410) - 6123004..6123399 (-) 396 WP_054616661.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58512.44 Da        Isoelectric Point: 6.8659

>NTDB_id=628129 LOY68_RS27420 WP_265045838.1 6118829..6120418(+) (pilS) [Pseudomonas sp. B21-053]
MIAEASSPGSKQAQRLLRLYHFYRLSVGITLVLLISSNMDNQLLTFANNDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
SLTLVDVLLLCGLLYAAGGVASAIGNLLIVSVAIGNTLLRGRIGLLIAAVAALGIVGLSFLLSFTRPTSPSDYLQAGTLG
ALCFAAALLVQGLIRRLEVSEHLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSALSLLGQERLEGQLID
EYSPILVERLQLWLNNPTLRPQSLKIARSGLELQPSFIALDQSPHHQTLIFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLLESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLKPWIEQYVAETREAATEG
QQIHLRIGMGHFTTLMDPNQLTQILDNLLRNAWRHSGSVHETAEVWLELFVDTDSQLPVLEVLDNGPGVAPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=628129 LOY68_RS27420 WP_265045838.1 6118829..6120418(+) (pilS) [Pseudomonas sp. B21-053]
GTGATCGCTGAGGCTTCCAGCCCCGGCAGCAAACAGGCCCAGCGACTGCTGCGCCTTTATCATTTTTACCGGTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGACGTTCGCCAATAACGATCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTGGAGAACACCCGGCGCCCGGCGCAGTTGTTC
AGCCTGACGCTGGTCGACGTCTTGCTGCTGTGCGGCTTGCTCTATGCCGCCGGCGGTGTGGCCAGCGCCATTGGCAACTT
GCTGATTGTGTCGGTGGCCATCGGCAACACCCTGCTGCGCGGGCGAATCGGCCTGTTGATTGCGGCGGTCGCGGCCCTTG
GCATTGTCGGCTTGAGCTTCCTGCTGAGCTTCACCCGCCCCACCAGTCCCAGCGACTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCGGCGTTGCTGGTGCAAGGTTTGATCCGACGCCTGGAAGTCAGCGAACACCTCGCCGAGCAGCG
GGCCAGCGAAGTGGTCAGCCTCGAAGCCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGGATTCTGGTGCTCGATG
AGCAGCGGCGGGTGCAACTGGCCAACCACAGCGCCCTGTCACTACTCGGTCAGGAGCGTCTCGAAGGCCAGTTGATCGAT
GAATACTCGCCGATCCTGGTCGAGCGCCTGCAACTGTGGCTCAACAACCCGACCTTGCGCCCTCAGAGCTTGAAGATCGC
CCGCTCCGGCCTGGAACTGCAGCCGAGCTTCATCGCCCTGGACCAGAGCCCGCACCATCAGACCCTGATCTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCGCAGCAATTGAAACTCGCTGCCCTGGGTCGCCTGACAGCCGGGATCGCCCACGAG
ATCCGCAATCCGCTGGGCGCCGTTAGTCATGCCGCGCAGCTGCTGCTGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACCCAGATTATCCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGCACCGCAACGGCTCGATCTGAAGCCGTGGATCGAGCAATACGTCGCCGAAACCCGCGAGGCCGCTACCGAAGGC
CAGCAAATTCACCTGCGCATAGGCATGGGCCACTTCACGACGCTGATGGACCCGAATCAACTGACGCAGATTCTCGACAA
CTTGTTGCGTAATGCCTGGCGTCACAGTGGCTCGGTCCATGAAACGGCCGAGGTCTGGCTGGAGCTGTTTGTCGACACCG
ACAGCCAACTGCCAGTCCTCGAAGTGCTGGACAATGGCCCAGGCGTGGCGCCGGACCAGCAGGCGCACTTGTTCGAACCC
TTCTTCACCACCAGTAGCCAGGGCACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCACACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.868

100

0.59