Detailed information NTG0628123

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY68_RS23505
• Genome accession: NZ_CP087205
• Coordinates: 5278049..5280283 (-)
• Length: 744 a.a.
• NCBI ID: WP_265040309.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-053
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5273049..5285283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY68_RS23470 (LOY68_23450)	murB	5273437..5274456 (-)	1020	WP_265040302.1	UDP-N-acetylmuramate dehydrogenase	-
LOY68_RS23475 (LOY68_23455)	-	5274453..5274917 (-)	465	WP_054613853.1	low molecular weight protein-tyrosine-phosphatase	-
LOY68_RS23480 (LOY68_23460)	kdsB	5274917..5275681 (-)	765	WP_054051747.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY68_RS23485 (LOY68_23465)	-	5275678..5275863 (-)	186	WP_007945752.1	Trm112 family protein	-
LOY68_RS23490 (LOY68_23470)	lpxK	5275889..5276899 (-)	1011	WP_265040307.1	tetraacyldisaccharide 4'-kinase	-
LOY68_RS23495 (LOY68_23475)	-	5276899..5277327 (-)	429	WP_265040308.1	ExbD/TolR family protein	-
LOY68_RS23500 (LOY68_23480)	exbB	5277324..5277962 (-)	639	WP_054051742.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY68_RS23505 (LOY68_23485)	comA	5278049..5280283 (-)	2235	WP_265040309.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY68_RS23510 (LOY68_23490)	-	5280420..5280935 (+)	516	WP_163913001.1	DUF2062 domain-containing protein	-
LOY68_RS23515 (LOY68_23495)	-	5281047..5281826 (-)	780	WP_054051736.1	ABC transporter permease	-
LOY68_RS23520 (LOY68_23500)	-	5281823..5282755 (-)	933	WP_054051734.1	ABC transporter ATP-binding protein	-
LOY68_RS23525 (LOY68_23505)	-	5282888..5283511 (-)	624	WP_265040310.1	glutathione S-transferase family protein	-
LOY68_RS23530 (LOY68_23510)	-	5283555..5284214 (-)	660	WP_265040311.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81396.66 Da
• Isoelectric Point: 10.0949

>NTDB_id=628123 LOY68_RS23505 WP_265040309.1 5278049..5280283(-) (comA) [Pseudomonas sp. B21-053]
MRTGMVALALGLLALRFLPVLPPVWLWLLLPVVGLMLLPFPTYPLAFFLFGFSWACGQAQSALDDRLAANLDGETRWVEG
RVVGLPQSSEKVLRFELADARSRHGSVPPLMRLAWYGGPPVNSGERWRMAVKLKRPTGLLNPHAFDYDAWLLAQGIGATG
TVKDGQRLSSARWAWRDGIRQRLLSVDAQGRAGALAALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPVRWPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLMLGLPISISGPLVNLLAVPWISLVVLPPAL
LGTVLLPLPYVGEGLLWLAGGLIDLLFKGLALMANQLPAWVPVAVPLWIGAIGALGAFLLLMPRGVPLRPLGWPMLLLLA
FPPREELPEGRAEIWQLDVGQGLAILVRTRQHTLLYDAGPRFGDFDLGERVVLPALRKLGVNGVDLMLLSHADADHAGGA
RAVHQGLKVARVISGDPLALPTELQAEGCESGQQWAWDGVTFQLWQWSAASESNQKSCVLQIEANGERLLLTGDIDTHAE
RALLDSPLAVPTDWLAAPHHGSRSSSSMALLSTLQPKAVLISRGHGNSFGHPHPTVMARYRKRGLHIYDSAEHGAVRLQL
GSFKAPRTMRQQRRFWRDVPALNK

Nucleotide

• Length: 2235 bp

>NTDB_id=628123 LOY68_RS23505 WP_265040309.1 5278049..5280283(-) (comA) [Pseudomonas sp. B21-053]
ATGCGCACAGGGATGGTGGCGCTGGCGCTCGGGTTATTGGCGTTGCGTTTTTTACCGGTGTTACCGCCGGTCTGGTTATG
GTTGTTGCTGCCGGTGGTGGGTTTGATGTTGCTGCCCTTTCCCACGTATCCGTTGGCATTTTTTTTGTTTGGCTTCAGTT
GGGCCTGCGGACAGGCGCAGTCGGCGCTGGACGATCGGCTGGCAGCAAACCTGGACGGTGAAACCCGCTGGGTCGAAGGT
CGAGTGGTGGGCTTGCCGCAGAGCAGCGAGAAAGTGCTGCGTTTCGAATTGGCAGACGCGCGTTCGCGACACGGATCTGT
GCCGCCGCTGATGCGCCTGGCTTGGTACGGCGGGCCGCCGGTCAATAGCGGTGAACGCTGGCGCATGGCGGTGAAGTTGA
AGCGCCCGACCGGGCTGCTCAACCCCCACGCTTTCGATTACGACGCCTGGCTGCTGGCACAGGGCATCGGCGCGACCGGC
ACGGTCAAGGATGGCCAGCGCCTGTCATCCGCCCGCTGGGCCTGGCGCGACGGCATCCGCCAACGCTTACTCAGTGTCGA
CGCCCAAGGGCGAGCCGGAGCGCTGGCGGCGTTGGTGCTGGGCGACGGCGCCGGGTTGAGCCGCGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGTTTGCTCGCGGGTTTGGTGTATTTGCTG
ATCGCAGGGCTCGCCCGATATGGCCTGTGGCCGGTGCGTTGGCCCTGGTTGCCGTGGGCGTGTGGGCTGGCATTCGCGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGGTTCGAAGTGCCGGTGCGCCGGGCCTGCGTGATGATTGGCCTGGTGCTGTTGT
GGCGGCTGCGCTTTCGTCATCTCGGCGCGTGGTGGCCGTTGTTGCTGGCGCTGGATGGCGTCTTGTTGCTGGACCCGCTC
GCGAGTCTGCAACCTGGATTCTGGCTGTCCTTTGCGGCGGTGGCGGTGTTGATCTTCACTTTCGGCGGTCGGCTGGGCCC
TTGGCGTTGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATTGCAATCGGCCTGTGCCCGCTGCTGCTGATGCTGGGTT
TGCCCATCAGCATCAGTGGACCGCTGGTCAATCTGCTCGCGGTGCCGTGGATCAGTCTGGTGGTCCTGCCGCCAGCCTTG
CTCGGGACAGTGCTGTTGCCGCTGCCTTACGTGGGGGAAGGGTTGTTGTGGTTGGCCGGCGGGCTGATCGATTTACTGTT
CAAGGGCCTGGCACTCATGGCGAATCAGTTGCCCGCGTGGGTGCCGGTGGCAGTACCGCTATGGATCGGGGCTATCGGCG
CATTGGGCGCCTTTCTTCTATTAATGCCACGGGGCGTTCCGTTGCGTCCGTTGGGCTGGCCGATGTTACTGCTGTTGGCA
TTTCCACCGCGCGAAGAGCTGCCCGAAGGCCGGGCCGAGATCTGGCAACTGGATGTCGGCCAGGGTTTGGCAATCCTGGT
GCGCACTCGCCAGCACACGCTGCTGTATGACGCCGGCCCGCGTTTTGGTGATTTTGACCTGGGTGAGCGGGTGGTGCTGC
CGGCATTGCGCAAACTCGGCGTGAACGGAGTCGATCTGATGCTGCTCAGTCACGCCGATGCCGACCATGCCGGCGGTGCG
CGAGCCGTCCATCAGGGGCTGAAAGTAGCGCGGGTGATCAGTGGCGATCCGCTGGCGCTGCCAACAGAGTTACAGGCCGA
GGGCTGCGAAAGTGGCCAGCAATGGGCCTGGGATGGCGTGACCTTCCAGCTCTGGCAATGGTCGGCGGCCAGCGAAAGCA
ATCAGAAATCCTGCGTCCTGCAAATCGAAGCCAATGGCGAGCGCCTGCTGCTGACCGGCGACATCGATACCCACGCCGAA
CGCGCGCTCCTGGACAGCCCGTTGGCGGTGCCCACCGATTGGCTTGCGGCGCCACACCACGGCAGTCGCAGTTCGTCATC
CATGGCACTGCTCAGCACGCTGCAACCCAAAGCGGTGCTGATCTCGCGCGGCCACGGCAACTCCTTCGGGCATCCCCATC
CCACGGTCATGGCGCGGTATCGCAAACGGGGCTTGCACATCTATGACAGCGCCGAGCACGGCGCCGTCCGTCTGCAACTG
GGCAGCTTCAAGGCACCGCGAACGATGCGTCAACAACGGCGCTTCTGGCGTGATGTGCCTGCGCTGAATAAATAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.031	96.64	0.599
comA	Ralstonia pseudosolanacearum GMI1000	33.964	100	0.386